RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA432257" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA432257 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31434595 31434595 PRJNA432257_S_NODE_9636_length_414_cov_15.527851_g9288_i0 PRJNA432257 9636 414 15.527851 64.28530314 Moloney murine leukemia virus 11801 Viruses Viruses 248 2.3599999999999995e-73   NR NP_057933.2 11801 g9288 i0 96.1 1.84057971014493 127 5 92 0 33 413 1144 1270 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 762 248 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31577713 31577713 PRJNA432257_S_NODE_3156_length_619_cov_19.537801_g2961_i0 PRJNA432257 3156 619 19.537801 120.93898819 Gammaretrovirus 153135 Viruses Viruses 389 1.81e-125   NR AAA79247.1 11786 g2961 i0 96.9 12.0872374798061 192 6 93.1 0 34 609 236 427 AAA79247.1 putative reverse transcriptase [Murine leukemia virus] diamond 7482 389 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31830472 31830472 PRJNA432257_S_NODE_8437_length_433_cov_153.055556_g8103_i0 PRJNA432257 8437 433 153.055556 662.73055748 Gammaretrovirus 153135 Viruses Viruses 271 4.7e-81   NR ARB03489.1 11786 g8103 i0 98.5 9.07621247113164 131 2 90.8 0 395 3 792 922 ARB03489.1 putative gag-pro-pol polyprotein [Murine leukemia virus] diamond 3930 273 0.992673992673993 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;