RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA432257" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA432257 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26759194 26759194 PRJNA432257_S_NODE_44061_length_242_cov_9.175610_g43680_i0 PRJNA432257 44061 242 9.17561 22.2049762 Hexamita inflata 28002 Fornicata other_Eukaryota 44.3 8.21e-4   NR CAK8746335.1 28002 g43680 i0 72 0.619834710743802 25 7 31 0 11 85 1 25 CAK8746335.1 HINF_020184 [Hexamita inflata] diamond 150 44.3 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
27613024 27613024 PRJNA432257_S_NODE_116264_length_160_cov_1.593496_g115883_i0 PRJNA432257 116264 160 1.593496 2.5495936 Aduncisulcus paluster 2918883 Fornicata other_Eukaryota 78.2 3.3e-15   NR GKT27431.1 2918883 g115883 i0 68.8 0.9 48 15 90 0 16 159 1 48 GKT27431.1 hypothetical protein ADUPG1_000039 [Aduncisulcus paluster] diamond 144 78.2 1 Eukaryota Metamonada   Fornicata       Aduncisulcus Aduncisulcus paluster
28086371 28086371 PRJNA432257_S_NODE_120525_length_156_cov_2.075630_g120144_i0 PRJNA432257 120525 156 2.07563 3.2379828 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 41.2 0.0415   NR XP_068367317.1 1144522 g120144 i0 48.8 0.826923076923077 43 21 80.8 1 22 147 252 294 XP_068367317.1 Casein kinase I isoform delta-like protein [Tritrichomonas foetus] diamond 129 41.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32542182 32542182 PRJNA432257_S_NODE_64139_length_210_cov_90.959538_g63758_i0 PRJNA432257 64139 210 90.959538 191.0150298 Blattamonas nauphoetae 2049346 Preaxostyla other_Eukaryota 42.4 0.0267   NR KAK2961368.1 2049346 g63758 i0 42.6 0.771428571428571 54 27 74.3 2 195 40 146 197 KAK2961368.1 putative GTP-binding protein YPTC4 [Blattamonas nauphoetae] diamond 162 42.4 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida   Blattamonas Blattamonas nauphoetae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;