RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA431371" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA431371 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8740811 8740811 PRJNA431371_P_NODE_18387_length_299_cov_1.022124_g18314_i0 PRJNA431371 18387 299 1.022124 3.05615076 FCB group 1783270 Bacteria Bacteria 113 2.75e-28   NR WP_298067053.1 527638 g18314 i0 63.3 15.7224080267559 90 33 90.3 0 272 3 25 114 WP_298067053.1 arsenic resistance protein, partial [uncultured Cetobacterium sp.] diamond 4701 114 0.991228070175439 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
28528696 28528696 PRJNA431371_P_NODE_27747_length_249_cov_0.875000_g27674_i0 PRJNA431371 27747 249 0.875 2.17875 Caviibacter abscessus 1766719 Bacteria Bacteria 134 1.92e-35   NR WP_068268604.1 1766719 g27674 i0 84.1 0.987951807228916 82 13 98.8 0 2 247 297 378 WP_068268604.1 TrkH family potassium uptake protein [Caviibacter abscessus] diamond 246 134 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Caviibacter Caviibacter abscessus
32257494 32257494 PRJNA431371_P_NODE_4798_length_541_cov_1.946581_g4725_i0 PRJNA431371 4798 541 1.946581 10.53100321 Leptotrichia wadei 157687 Bacteria Bacteria 57.8 3.91e-6   NR WP_021746721.1 157687 g4725 i0 31.2 1.48059149722736 138 87 73.8 4 462 64 70 204 WP_021746721.1 tetratricopeptide repeat protein [Leptotrichia wadei] diamond 801 57.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;