RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA429937" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA429937 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2976331 2976331 PRJNA429937_P_NODE_11283_length_1084_cov_4.824645_g6277_i1 PRJNA429937 11283 1084 4.824645 52.2991518 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 300 2.1199999999999993e-90   NR KAG1693818.1 4784 g6277 i1 72.7 13.190036900369 216 10 59.8 2 981 334 270 436 KAG1693818.1 hypothetical protein DVH05_022920 [Phytophthora capsici] diamond 14298 302 0.993377483443709 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
16390015 16390015 PRJNA429937_P_NODE_32033_length_642_cov_2.838499_g19609_i0 PRJNA429937 32033 642 2.838499 18.22316358 Phytophthora oleae 2107226 SAR_Eukaryotes SAR_Eukaryotes 76.6 3.01e-12   NR KAL3673387.1 2107226 g19609 i0 48.9 0.429906542056075 92 41 40.2 2 186 443 509 600 KAL3673387.1 hypothetical protein V7S43_001100 [Phytophthora oleae] diamond 276 76.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora oleae
27377001 27377001 PRJNA429937_P_NODE_133523_length_217_cov_3.005319_g110896_i0 PRJNA429937 133523 217 3.005319 6.52154223 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 49.3 1.34e-4   NR OWZ09397.1 4795 g110896 i0 58.6 4.36866359447005 29 12 40.1 0 88 2 247 275 OWZ09397.1 polyprotein [Phytophthora megakarya] diamond 948 49.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya
27612973 27612973 PRJNA429937_P_NODE_73724_length_388_cov_4.116992_g31558_i1 PRJNA429937 73724 388 4.116992 15.97392896 Peronospora farinosa 134698 SAR_Eukaryotes SAR_Eukaryotes 165 9.68e-50   NR CAH0485653.1 134698 g31558 i1 71.8 0.79639175257732 103 29 79.6 0 16 324 45 147 CAH0485653.1 unnamed protein product [Peronospora farinosa] diamond 309 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora farinosa
28275758 28275758 PRJNA429937_P_NODE_48486_length_510_cov_3.754678_g31558_i0 PRJNA429937 48486 510 3.754678 19.1488578 Peronospora farinosa 134698 SAR_Eukaryotes SAR_Eukaryotes 117 6.47e-30   NR CAH0485470.1 134698 g31558 i0 77.6 0.788235294117647 67 15 39.4 0 315 115 75 141 CAH0485470.1 unnamed protein product [Peronospora farinosa] diamond 402 117 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora farinosa
28528643 28528643 PRJNA429937_P_NODE_25327_length_729_cov_2.854286_g15137_i0 PRJNA429937 25327 729 2.854286 20.80774494 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 232 7.269999999999999e-72   NR TYZ62095.1 1485010 g15137 i0 80.4 0.588477366255144 143 28 58.8 0 5 433 129 271 TYZ62095.1 hypothetical protein PybrP1_000907 [[Pythium] brassicae (nom. inval.)] diamond 429 232 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
30612728 30612728 PRJNA429937_P_NODE_76153_length_379_cov_4.177143_g31558_i2 PRJNA429937 76153 379 4.177143 15.83137197 Peronospora farinosa 134698 SAR_Eukaryotes SAR_Eukaryotes 166 4.27e-50   NR CAH0485653.1 134698 g31558 i2 71.8 0.815303430079156 103 29 81.5 0 16 324 45 147 CAH0485653.1 unnamed protein product [Peronospora farinosa] diamond 309 166 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora farinosa
30770976 30770976 PRJNA429937_P_NODE_32574_length_636_cov_3.113674_g15137_i1 PRJNA429937 32574 636 3.113674 19.80296664 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 232 2.3099999999999997e-72   NR TYZ62095.1 1485010 g15137 i1 80.4 0.674528301886792 143 28 67.5 0 632 204 129 271 TYZ62095.1 hypothetical protein PybrP1_000907 [[Pythium] brassicae (nom. inval.)] diamond 429 232 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
31514616 31514616 PRJNA429937_P_NODE_46936_length_520_cov_2.861507_g30382_i0 PRJNA429937 46936 520 2.861507 14.8798364 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 65.9 3.77e-10   NR OQS01886.1 74557 g30382 i0 36.3 0.934615384615385 80 51 46.2 0 28 267 62 141 OQS01886.1 hypothetical protein THRCLA_21579 [Thraustotheca clavata] diamond 486 65.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
32604943 32604943 PRJNA429937_P_NODE_126480_length_233_cov_1.808824_g103853_i0 PRJNA429937 126480 233 1.808824 4.21455992 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 50.1 7.34e-5   NR CCA16746.1 890382 g103853 i0 71.9 0.412017167381974 32 9 41.2 0 131 226 187 218 CCA16746.1 putative polyprotein [Albugo laibachii Nc14] diamond 96 50.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
32730948 32730948 PRJNA429937_P_NODE_129800_length_225_cov_3.897959_g107173_i0 PRJNA429937 129800 225 3.897959 8.77040775 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 48.9 1.92e-4   NR TYZ62095.1 1485010 g107173 i0 85.2 0.36 27 4 36 0 1 81 298 324 TYZ62095.1 hypothetical protein PybrP1_000907 [[Pythium] brassicae (nom. inval.)] diamond 81 48.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
32730950 32730950 PRJNA429937_P_NODE_133120_length_218_cov_2.417989_g110493_i0 PRJNA429937 133120 218 2.417989 5.27121602 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.00786   NR GLE01126.1 114742 g110493 i0 58.1 0.591743119266055 43 18 59.2 0 1 129 1106 1148 GLE01126.1 hypothetical protein PINS_up009956 [Pythium insidiosum] diamond 129 44.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;