RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA429937" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA429937 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24653340 24653340 PRJNA429937_P_NODE_59300_length_450_cov_7.370546_g39786_i0 PRJNA429937 59300 450 7.370546 33.167457 Halteria grandinella 5974 SAR_Eukaryotes SAR_Eukaryotes 63.2 2.67e-8   NR TNV87182.1 5974 g39786 i0 43.7 0.686666666666667 103 38 55.3 2 102 350 855 957 TNV87182.1 hypothetical protein FGO68_gene9481 [Halteria grandinella] diamond 309 63.2 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
30739142 30739142 PRJNA429937_P_NODE_140774_length_204_cov_2.262857_g118147_i0 PRJNA429937 140774 204 2.262857 4.61622828 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 87.4 4.05e-18   NR XP_001030873.3 312017 g118147 i0 85.4 0.705882352941177 48 7 70.6 0 36 179 1023 1070 XP_001030873.3 hypothetical protein TTHERM_01002750 [Tetrahymena thermophila SB210] diamond 144 87.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;