RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA421571" and tax_phylum = "Gastrotricha"

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tax_superkingdom 1

tax_phylum 1

  • Gastrotricha · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA421571 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27296931 27296931 PRJNA421571_P_NODE_89723_length_255_cov_1.269231_g87174_i0 PRJNA421571 89723 255 1.269231 3.23653905 Litigonotus ghinii 3104745 Gastrotricha other_Eukaryota 120 5.909999999999999e-32   NR XCN99738.1 3104745 g87174 i0 79.8 1.81176470588235 84 17 98.8 0 1 252 56 139 XCN99738.1 ATP synthase F0 subunit 6 [Litigonotus ghinii] diamond 462 120 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Litigonotus Litigonotus ghinii
29033827 29033827 PRJNA421571_P_NODE_59848_length_340_cov_1.730337_g57299_i0 PRJNA421571 59848 340 1.730337 5.8831458 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 89.7 4.65e-19   NR YP_009136577.1 1194616 g57299 i0 91.3 0.405882352941176 46 4 40.6 0 234 97 98 143 YP_009136577.1 cytochrome c oxidase subunit 3 [Lepidodermella squamata] diamond 138 89.7 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata
29317711 29317711 PRJNA421571_P_NODE_82809_length_270_cov_1.563452_g80260_i0 PRJNA421571 82809 270 1.563452 4.2213204 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 111 4.83e-27   NR YP_009136570.1 1194616 g80260 i0 77.9 0.755555555555556 68 15 75.6 0 269 66 7 74 YP_009136570.1 cytochrome b [Lepidodermella squamata] diamond 204 111 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;