RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA421571" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA421571 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27170221 27170221 PRJNA421571_P_NODE_106422_length_241_cov_0.916667_g103873_i0 PRJNA421571 106422 241 0.916667 2.20916747 Chthonomonadales bacterium 2282151 Bacteria Bacteria 75.9 7.01e-14   NR MCW3050877.1 2282151 g103873 i0 72.1 2.62655601659751 43 12 53.5 0 241 113 350 392 MCW3050877.1 amino acid/polyamine/organocation transporter,APC superfamily [Chthonomonadales bacterium] diamond 633 75.9 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales     Chthonomonadales bacterium
28212411 28212411 PRJNA421571_P_NODE_87866_length_259_cov_1.440860_g85317_i0 PRJNA421571 87866 259 1.44086 3.7318274 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 121 3.8199999999999997e-31   NR MBX7131525.1 2682144 g85317 i0 70.6 0.984555984555985 85 24 98.5 1 3 257 68 151 MBX7131525.1 pyridoxal-phosphate dependent enzyme [Fimbriimonadaceae bacterium] diamond 255 121 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;