RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA416866" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA416866 · 22 ✖

analysis 1

  • diamond · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1694462 1694462 PRJNA416866_P_NODE_3322_length_367_cov_1.830065_g3179_i0 PRJNA416866 3322 367 1.830065 6.71633855 Chondrichthyes 7777 Chordata Chordata 141 3.19e-38   NR XP_055487320.1 7782 g3179 i0 81.9 81.3923705722071 83 15 67.8 0 249 1 214 296 XP_055487320.1 LOW QUALITY PROTEIN: histone H2B.v1-like [Leucoraja erinaceus] diamond 29871 142 0.992957746478873 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
9347734 9347734 PRJNA416866_P_NODE_3788_length_340_cov_5.953405_g3645_i0 PRJNA416866 3788 340 5.953405 20.241577 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 128 1.04e-33   NR CBY34963.1 34765 g3645 i0 70 3.55588235294118 80 24 70.6 0 101 340 4 83 CBY34963.1 unnamed protein product [Oikopleura dioica] diamond 1209 128 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
18271300 18271300 PRJNA416866_P_NODE_6335_length_259_cov_0.838384_g6191_i0 PRJNA416866 6335 259 0.838384 2.17141456 Aves 8782 Chordata Chordata 73.2 8.82e-13   NR XP_010002818.1 8897 g6191 i0 68.5 3.33590733590734 73 23 84.6 0 1 219 525 597 XP_010002818.1 PREDICTED: calreticulin-like, partial [Chaetura pelagica] diamond 864 73.9 0.990527740189445 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Apodidae Chaetura Chaetura pelagica
18935201 18935201 PRJNA416866_P_NODE_10595_length_205_cov_0.888889_g10451_i0 PRJNA416866 10595 205 0.888889 1.82222245 Neotoma lepida 56216 Chordata Chordata 56.6 2.5e-7   NR OBS77061.1 56216 g10451 i0 71.4 24.3219512195122 42 12 61.5 0 126 1 4 45 OBS77061.1 hypothetical protein A6R68_16470 [Neotoma lepida] diamond 4986 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Neotoma Neotoma lepida
27802262 27802262 PRJNA416866_P_NODE_10184_length_207_cov_0.876712_g10040_i0 PRJNA416866 10184 207 0.876712 1.81479384 Erythrolamprus reginae 121349 Chordata Chordata 78.2 2.17e-16   NR XP_070620966.1 121349 g10040 i0 54.5 7.7536231884058 66 30 95.7 0 1 198 10 75 XP_070620966.1 glia maturation factor gamma [Erythrolamprus reginae] diamond 1605 78.2 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dipsadidae Erythrolamprus Erythrolamprus reginae
28418853 28418853 PRJNA416866_P_NODE_7306_length_239_cov_2.106742_g7162_i0 PRJNA416866 7306 239 2.106742 5.03511338 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 112 5.47e-27   NR KAG8597326.1 76066 g7162 i0 71.3 7.85774058577406 80 22 99.2 1 239 3 290 369 KAG8597326.1 hypothetical protein GDO81_002249 [Engystomops pustulosus] diamond 1878 112 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
28797307 28797307 PRJNA416866_P_NODE_6447_length_256_cov_1.835897_g6303_i0 PRJNA416866 6447 256 1.835897 4.69989632 root 1 Root_unresolved Root_unresolved 43.9 0.0116   NR XP_039739851.1 132908 g6303 i0 33.3 2.5546875 69 42 77.3 2 207 10 99 166 XP_039739851.1 LOW QUALITY PROTEIN: neuroglobin [Pteropus vampyrus] diamond 654 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus vampyrus
29965909 29965909 PRJNA416866_P_NODE_7371_length_238_cov_2.135593_g7227_i0 PRJNA416866 7371 238 2.135593 5.08271134 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 139 4.95e-41   NR XP_041429734.1 8355 g7227 i0 82.3 64.7899159663866 79 14 99.6 0 238 2 19 97 XP_041429734.1 40S ribosomal protein S27 isoform X1 [Xenopus laevis] diamond 15420 139 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
30012558 30012558 PRJNA416866_P_NODE_3291_length_370_cov_0.812298_g3148_i0 PRJNA416866 3291 370 0.812298 3.0055026 Phoca vitulina 9720 Chordata Chordata 44.3 0.0378   NR XP_032253802.1 9720 g3148 i0 36.8 0.551351351351351 68 41 53.5 1 49 246 79 146 XP_032253802.1 uncharacterized protein LOC116627935 [Phoca vitulina] diamond 204 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Phoca Phoca vitulina
30233552 30233552 PRJNA416866_P_NODE_11892_length_201_cov_0.914286_g11748_i0 PRJNA416866 11892 201 0.914286 1.83771486 Narcine bancroftii 1343680 Chordata Chordata 42 0.0416   NR XP_069766543.1 1343680 g11748 i0 39.5 0.567164179104478 38 23 56.7 0 186 73 23 60 XP_069766543.1 tumor protein p53-inducible protein 13 isoform X1 [Narcine bancroftii] diamond 114 42 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Torpediniformes Narcinidae Narcine Narcine bancroftii
30376976 30376976 PRJNA416866_P_NODE_11232_length_203_cov_0.901408_g11088_i0 PRJNA416866 11232 203 0.901408 1.82985824 Artiodactyla 91561 Chordata Chordata 76.6 1.99e-14   NR NP_999038.2 9823 g11088 i0 61.4 6.76847290640394 57 20 84.2 1 178 8 56 110 NP_999038.2 pepsin A preproprotein [Sus scrofa] diamond 1374 76.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
30439941 30439941 PRJNA416866_P_NODE_5613_length_276_cov_1.190698_g5469_i0 PRJNA416866 5613 276 1.190698 3.28632648 Cervidae 9850 Chordata Chordata 112 3.9e-27   NR OWK11568.1 46360 g5469 i0 57.3 3.16304347826087 103 27 98.9 2 274 2 40 137 OWK11568.1 hypothetical protein Celaphus_00003504 [Cervus elaphus hippelaphus] diamond 873 112 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
30565807 30565807 PRJNA416866_P_NODE_11793_length_201_cov_0.914286_g11649_i0 PRJNA416866 11793 201 0.914286 1.83771486 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.1 5.57e-5   NR CAL5927101.1 7748 g11649 i0 34.7 3.28358208955224 49 31 73.1 1 158 12 790 837 CAL5927101.1 unnamed protein product [Lampetra fluviatilis] diamond 660 50.4 0.994047619047619 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
30675745 30675745 PRJNA416866_P_NODE_5193_length_288_cov_0.938326_g5049_i0 PRJNA416866 5193 288 0.938326 2.70237888 Bufotes viridis 30338 Chordata Chordata 48.9 4.14e-4   NR CAK8609802.1 30338 g5049 i0 62.5 0.333333333333333 32 12 33.3 0 191 286 1 32 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 96 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
30707447 30707447 PRJNA416866_P_NODE_10814_length_204_cov_1.650350_g10670_i0 PRJNA416866 10814 204 1.65035 3.366714 Hymenochirus boettgeri 247094 Chordata Chordata 62 3.2e-9   NR KAG8432405.1 247094 g10670 i0 52.8 1.55882352941176 53 25 77.9 0 31 189 25 77 KAG8432405.1 hypothetical protein GDO86_016884 [Hymenochirus boettgeri] diamond 318 62 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Hymenochirus Hymenochirus boettgeri
30707453 30707453 PRJNA416866_P_NODE_3094_length_382_cov_2.635514_g2951_i0 PRJNA416866 3094 382 2.635514 10.06766348 Aix galericulata 8832 Chordata Chordata 44.3 0.0304   NR KAI6071470.1 8832 g2951 i0 29.6 0.557591623036649 71 45 51.8 1 151 348 84 154 KAI6071470.1 Cystatin-F [Aix galericulata] diamond 213 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Aix Aix galericulata
30739021 30739021 PRJNA416866_P_NODE_6534_length_255_cov_0.989691_g6390_i0 PRJNA416866 6534 255 0.989691 2.52371205 Meriones unguiculatus 10047 Chordata Chordata 43.9 0.0162   NR XP_021506376.1 10047 g6390 i0 45.1 1.67058823529412 71 32 77.6 3 205 8 225 293 XP_021506376.1 arf-GAP domain and FG repeat-containing protein 2 isoform X3 [Meriones unguiculatus] diamond 426 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Meriones Meriones unguiculatus
31451187 31451187 PRJNA416866_P_NODE_9316_length_210_cov_2.375839_g9172_i0 PRJNA416866 9316 210 2.375839 4.9892619 Lepidosauria 8504 Chordata Chordata 91.7 1.39e-19   NR XP_006017841.1 38654 g9172 i0 58 1.94285714285714 69 29 98.6 0 208 2 37 105 XP_006017841.1 thioredoxin reductase 3 [Alligator sinensis] diamond 408 92.4 0.992424242424242 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator sinensis
31609259 31609259 PRJNA416866_P_NODE_1956_length_490_cov_2.319347_g1814_i0 PRJNA416866 1956 490 2.319347 11.3648003 Chordata 7711 Chordata Chordata 231 6.27e-73   NR MEE6463730.1 8439 g1814 i0 66.9 32.8040816326531 163 53 99.8 1 489 1 125 286 MEE6463730.1 hypothetical protein [Ascaphus truei] diamond 16074 233 0.991416309012876 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
32242257 32242257 PRJNA416866_P_NODE_10938_length_204_cov_0.895105_g10794_i0 PRJNA416866 10938 204 0.895105 1.8260142 Casuariiformes 8784 Chordata Chordata 85.9 1.35e-17   NR NXE51016.1 8787 g10794 i0 54.4 4 68 31 100 0 1 204 324 391 NXE51016.1 PLBLB protein [Casuarius casuarius] diamond 816 85.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Casuariiformes Casuariidae Casuarius Casuarius casuarius
32495198 32495198 PRJNA416866_P_NODE_6019_length_266_cov_0.936585_g5875_i0 PRJNA416866 6019 266 0.936585 2.4913161 root 1 Root_unresolved Root_unresolved 108 5.31e-26   NR XP_039603859.1 55291 g5875 i0 82.5 4.31954887218045 63 11 71.1 0 78 266 6 68 XP_039603859.1 GMP reductase 2 isoform X1 [Polypterus senegalus] diamond 1149 109 0.990825688073395 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32558605 32558605 PRJNA416866_P_NODE_8719_length_218_cov_1.458599_g8575_i0 PRJNA416866 8719 218 1.458599 3.17974582 Passeriformes 9126 Chordata Chordata 63.2 9.21e-10   NR XP_014743133.1 9172 g8575 i0 58.7 5.22935779816514 46 19 63.3 0 33 170 189 234 XP_014743133.1 PREDICTED: thiamin pyrophosphokinase 1 isoform X2 [Sturnus vulgaris] diamond 1140 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sturnidae Sturnus Sturnus vulgaris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;