RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA416866" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA416866 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26917393 26917393 PRJNA416866_P_NODE_11202_length_203_cov_0.901408_g11058_i0 PRJNA416866 11202 203 0.901408 1.82985824 Candidatus Mediterraneibacter norwichensis 2838680 Bacteria Bacteria 47 6.74e-4   NR HIV52785.1 2838680 g11058 i0 51 1.49261083743842 49 24 72.4 0 7 153 257 305 HIV52785.1 L-lactate dehydrogenase [Candidatus Mediterraneibacter norwichensis] diamond 303 47 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Candidatus Mediterraneibacter norwichensis
27928446 27928446 PRJNA416866_P_NODE_9085_length_213_cov_1.335526_g8941_i0 PRJNA416866 9085 213 1.335526 2.84467038 Mordavella massiliensis 1871024 Bacteria Bacteria 43.1 0.0188   NR WP_204909920.1 1871024 g8941 i0 29.5 1.73239436619718 61 42 85.9 1 201 19 295 354 WP_204909920.1 lipopolysaccharide biosynthesis protein [Mordavella massiliensis] diamond 369 43.1 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Mordavella Mordavella massiliensis
28481822 28481822 PRJNA416866_P_NODE_9286_length_211_cov_1.273333_g9142_i0 PRJNA416866 9286 211 1.273333 2.68673263 root 1 Root_unresolved Root_unresolved 43.5 0.0128   NR WP_063383612.1 1455 g9142 i0 37.7 2.77251184834123 61 36 83.9 1 190 14 63 123 WP_063383612.1 sensor histidine kinase [Bacillus badius] diamond 585 43.9 0.990888382687927 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Pseudobacillus Pseudobacillus badius
29160031 29160031 PRJNA416866_P_NODE_1589_length_552_cov_1.289206_g1448_i0 PRJNA416866 1589 552 1.289206 7.11641712 Clostridiaceae bacterium 1898204 Bacteria Bacteria 51.2 1.64e-4   NR NLF37365.1 1898204 g1448 i0 24.3 0.625 115 76 56.5 2 516 205 5 119 NLF37365.1 GNAT family N-acetyltransferase [Clostridiaceae bacterium] diamond 345 51.2 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae   Clostridiaceae bacterium
29475244 29475244 PRJNA416866_P_NODE_9470_length_209_cov_0.864865_g9326_i0 PRJNA416866 9470 209 0.864865 1.80756785 Streptococcus rubneri 1234680 Bacteria Bacteria 139 3.039999999999999e-38   NR WP_195563958.1 1234680 g9326 i0 100 0.976076555023923 68 0 97.6 0 207 4 245 312 WP_195563958.1 hypothetical protein [Streptococcus rubneri] diamond 204 139 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus rubneri
29507023 29507023 PRJNA416866_P_NODE_10990_length_204_cov_0.895105_g10846_i0 PRJNA416866 10990 204 0.895105 1.8260142 Fusibacter sp. 2004507 Bacteria Bacteria 82 2.32e-16   NR HSN67109.1 2004507 g10846 i0 58.2 0.985294117647059 67 28 98.5 0 2 202 164 230 HSN67109.1 transposase family protein [Fusibacter sp.] diamond 201 82 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Eubacteriales Family XII. Incertae Sedis Fusibacter Fusibacter sp.
29727864 29727864 PRJNA416866_P_NODE_3850_length_338_cov_2.079422_g3707_i0 PRJNA416866 3850 338 2.079422 7.02844636 Parasporobacterium sp. 2740533 Bacteria Bacteria 49.3 5.44e-4   NR MCF0228404.1 2740533 g3707 i0 35.7 0.621301775147929 70 45 62.1 0 100 309 122 191 MCF0228404.1 MATE family efflux transporter [Parasporobacterium sp.] diamond 210 49.3 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Parasporobacterium Parasporobacterium sp.
30029138 30029138 PRJNA416866_P_NODE_11751_length_201_cov_0.914286_g11607_i0 PRJNA416866 11751 201 0.914286 1.83771486 Pseudobutyrivibrio 46205 Bacteria Bacteria 55.1 5.16e-7   NR MCR4674174.1 1898203 g11607 i0 56.4 4.76119402985075 39 17 58.2 0 5 121 175 213 MCR4674174.1 adenylate kinase [Lachnospiraceae bacterium] diamond 957 55.5 0.992792792792793 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae   Lachnospiraceae bacterium
31798790 31798790 PRJNA416866_P_NODE_8877_length_216_cov_1.238710_g8733_i0 PRJNA416866 8877 216 1.23871 2.6756136 Bacillati 1783272 Bacteria Bacteria 57.4 1.46e-7   NR WP_155704045.1 1778678 g8733 i0 43.1 3.68055555555556 72 36 93.1 1 15 215 187 258 WP_155704045.1 ankyrin repeat domain-containing protein [Paenibacillus psychroresistens] diamond 795 57.4 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus psychroresistens
32730832 32730832 PRJNA416866_P_NODE_7460_length_237_cov_1.454545_g7316_i0 PRJNA416866 7460 237 1.454545 3.44727165 uncultured Clostridium sp. 59620 Bacteria Bacteria 108 1.79e-25   NR WP_297632933.1 59620 g7316 i0 66.2 1.91139240506329 74 25 93.7 0 2 223 375 448 WP_297632933.1 amino acid permease [uncultured Clostridium sp.] diamond 453 108 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium uncultured Clostridium sp.
32825252 32825252 PRJNA416866_P_NODE_8540_length_220_cov_1.974843_g8396_i0 PRJNA416866 8540 220 1.974843 4.3446546 Enterococcus faecalis 1351 Bacteria Bacteria 97.1 2.11e-24   NR WP_375855466.1 1351 g8396 i0 91.4 0.790909090909091 58 5 79.1 0 218 45 31 88 WP_375855466.1 hypothetical protein [Enterococcus faecalis] diamond 174 97.1 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;