RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA416866" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA416866 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19545475 19545475 PRJNA416866_P_NODE_3236_length_373_cov_1.435897_g3093_i0 PRJNA416866 3236 373 1.435897 5.35589581 Eimeria tenella 5802 SAR_Eukaryotes SAR_Eukaryotes 196 9.17e-59   NR XP_013232628.1 5802 g3093 i0 78 12.8525469168901 123 27 98.9 0 2 370 18 140 XP_013232628.1 60S ribosomal protein L3, putative [Eimeria tenella] diamond 4794 196 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
24646050 24646050 PRJNA416866_P_NODE_9020_length_214_cov_1.254902_g8876_i0 PRJNA416866 9020 214 1.254902 2.68549028 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 110 7.71e-27   NR XP_028860810.1 5858 g8876 i0 80 1.96261682242991 70 14 98.1 0 211 2 198 267 XP_028860810.1 phosphoglycerate kinase, putative [Plasmodium malariae] diamond 420 111 0.990990990990991 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium malariae
30960339 30960339 PRJNA416866_P_NODE_9134_length_212_cov_2.602649_g8990_i0 PRJNA416866 9134 212 2.602649 5.51761588 Neospora caninum Liverpool 572307 SAR_Eukaryotes SAR_Eukaryotes 85.9 2.15e-19   NR XP_003882281.1 572307 g8990 i0 60.3 4.7688679245283 68 27 96.2 0 212 9 74 141 XP_003882281.1 40S ribosomal protein S12, related [Neospora caninum Liverpool] diamond 1011 85.9 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;