RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA415856" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA415856 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27186837 27186837 PRJNA415856_P_NODE_23522_length_186_cov_1.489051_g23261_i0 PRJNA415856 23522 186 1.489051 2.76963486 Luteolibacter 518753 Bacteria Bacteria 125 8.019999999999999e-32   NR WP_264503544.1 1859460 g23261 i0 96.8 9 62 2 100 0 186 1 141 202 WP_264503544.1 ATP-binding cassette domain-containing protein [Luteolibacter flavescens] diamond 1674 126 0.992063492063492 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter flavescens
27534593 27534593 PRJNA415856_P_NODE_42223_length_165_cov_0.879310_g41962_i0 PRJNA415856 42223 165 0.87931 1.4508615 Terrimicrobium 1649503 Bacteria Bacteria 107 1.63e-25   NR HEY5770341.1 1965319 g41962 i0 98.2 3 55 1 100 0 165 1 24 78 HEY5770341.1 outer membrane protein assembly factor BamA [Terrimicrobium sp.] diamond 495 107 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium Terrimicrobium sp.
27770759 27770759 PRJNA415856_P_NODE_53244_length_161_cov_0.910714_g52983_i0 PRJNA415856 53244 161 0.910714 1.46624954 Luteolibacter sp. 1962973 Bacteria Bacteria 87.4 1.85e-18   NR MEO7098658.1 1962973 g52983 i0 84 1.91925465838509 50 8 93.2 0 151 2 213 262 MEO7098658.1 MBL fold metallo-hydrolase [Luteolibacter sp.] diamond 309 87.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
28717861 28717861 PRJNA415856_P_NODE_47687_length_163_cov_0.894737_g47426_i0 PRJNA415856 47687 163 0.894737 1.45842131 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 40.4 0.0402   NR MBU1694158.1 2026799 g47426 i0 41 0.717791411042945 39 23 71.8 0 133 17 88 126 MBU1694158.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 117 40.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29380808 29380808 PRJNA415856_P_NODE_48789_length_162_cov_0.902655_g48528_i0 PRJNA415856 48789 162 0.902655 1.4623011 Haloferula sp. 2497595 Bacteria Bacteria 99 9.99e-25   NR HEY1122096.1 2497595 g48528 i0 96.2 1.96296296296296 53 2 98.1 0 2 160 48 100 HEY1122096.1 saccharopine dehydrogenase NADP-binding domain-containing protein [Haloferula sp.] diamond 318 99 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula sp.
30075453 30075453 PRJNA415856_P_NODE_51932_length_161_cov_0.910714_g51671_i0 PRJNA415856 51932 161 0.910714 1.46624954 Opitutaceae bacterium 2006848 Bacteria Bacteria 89.7 7.86e-20   NR HWA08628.1 2006848 g51671 i0 78.8 0.968944099378882 52 11 96.9 0 6 161 33 84 HWA08628.1 outer membrane lipoprotein-sorting protein [Opitutaceae bacterium] diamond 156 89.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
31908893 31908893 PRJNA415856_P_NODE_40897_length_165_cov_0.879310_g40636_i0 PRJNA415856 40897 165 0.87931 1.4508615 Luteolibacter sp. 1962973 Bacteria Bacteria 77.4 2.74e-16   NR MEP2774824.1 1962973 g40636 i0 54.5 2 55 25 100 0 1 165 33 87 MEP2774824.1 hypothetical protein [Luteolibacter sp.] diamond 330 77.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
32225408 32225408 PRJNA415856_P_NODE_49638_length_162_cov_0.902655_g49377_i0 PRJNA415856 49638 162 0.902655 1.4623011 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 94.7 3.46e-21   NR HXA08440.1 2201154 g49377 i0 79.2 0.981481481481482 53 11 98.1 0 162 4 127 179 HXA08440.1 diaminopimelate decarboxylase [Chthoniobacterales bacterium] diamond 159 94.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;