RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA415856" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA415856 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4246483 4246483 PRJNA415856_P_NODE_4784_length_445_cov_2.790404_g4523_i0 PRJNA415856 4784 445 2.790404 12.4172978 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 259 1.62e-80   NR PAA66478.1 282301 g4523 i0 76.2 3.97752808988764 147 35 99.1 0 445 5 459 605 PAA66478.1 hypothetical protein BOX15_Mlig026274g1, partial [Macrostomum lignano] diamond 1770 259 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
29128470 29128470 PRJNA415856_P_NODE_27689_length_178_cov_1.581395_g27428_i0 PRJNA415856 27689 178 1.581395 2.8148831 Cichlidogyrus casuarinus 1844966 Platyhelminthes Platyhelminthes 45.4 0.00179   NR KAL3310857.1 1844966 g27428 i0 38.9 2.78089887640449 54 33 91 0 177 16 497 550 KAL3310857.1 hypothetical protein Ciccas_010572, partial [Cichlidogyrus casuarinus] diamond 495 45.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Dactylogyridea Ancyrocephalidae Cichlidogyrus Cichlidogyrus casuarinus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;