RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA415856" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA415856 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29145164 29145164 PRJNA415856_P_NODE_23429_length_186_cov_1.875912_g23168_i0 PRJNA415856 23429 186 1.875912 3.48919632 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.00925   NR KAG7401495.1 109152 g23168 i0 76.9 1.25806451612903 26 6 41.9 0 115 38 87 112 KAG7401495.1 Hsp90 cochaperone shq1 [Phytophthora boehmeriae] diamond 234 43.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae
29334300 29334300 PRJNA415856_P_NODE_39109_length_166_cov_0.871795_g38848_i0 PRJNA415856 39109 166 0.871795 1.4471797 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 54.3 1.04e-6   NR CCI40038.1 65357 g38848 i0 51.1 4.33734939759036 47 23 84.9 0 164 24 264 310 CCI40038.1 unnamed protein product [Albugo candida] diamond 720 54.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
30297240 30297240 PRJNA415856_P_NODE_38152_length_166_cov_0.871795_g37891_i0 PRJNA415856 38152 166 0.871795 1.4471797 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0187   NR KAJ8571932.1 4785 g37891 i0 40.7 1.7710843373494 54 30 97.6 1 163 2 1323 1374 KAJ8571932.1 hypothetical protein ON010_g4901 [Phytophthora cinnamomi] diamond 294 42.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;