RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA415856" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA415856 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27517971 27517971 PRJNA415856_P_NODE_43063_length_164_cov_1.052174_g42802_i0 PRJNA415856 43063 164 1.052174 1.72556536 Halococcus agarilyticus 1232219 Archaea Archaea 105 1.13e-24   NR WP_049902900.1 1232219 g42802 i0 94.3 0.969512195121951 53 3 97 0 1 159 207 259 WP_049902900.1 phosphate ABC transporter permease PstA [Halococcus agarilyticus] diamond 159 105 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus agarilyticus
29871093 29871093 PRJNA415856_P_NODE_43191_length_164_cov_0.886957_g42930_i0 PRJNA415856 43191 164 0.886957 1.45460948 root 1 Root_unresolved Root_unresolved 45.1 0.00193   NR WP_004029977.1 2162 g42930 i0 44.4 2.72560975609756 45 25 82.3 0 143 9 151 195 WP_004029977.1 HNH endonuclease [Methanobacterium formicicum] diamond 447 45.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
29997590 29997590 PRJNA415856_P_NODE_33911_length_168_cov_1.714286_g33650_i0 PRJNA415856 33911 168 1.714286 2.88000048 Methanobrevibacter 2172 Archaea Archaea 97.1 9.82e-22   NR WP_406536942.1 66852 g33650 i0 96.4 14.9464285714286 55 2 98.2 0 1 165 21 75 WP_406536942.1 glycosyltransferase [Methanobrevibacter sp.] diamond 2511 97.8 0.992842535787321 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30043897 30043897 PRJNA415856_P_NODE_28411_length_177_cov_1.507812_g28150_i0 PRJNA415856 28411 177 1.507812 2.66882724 Saliphagus sp. LR7 2282654 Archaea Archaea 79.7 1.12e-15   NR WP_114578608.1 2282654 g28150 i0 71.2 1 59 17 100 0 1 177 164 222 WP_114578608.1 ISH3 family transposase [Saliphagus sp. LR7] diamond 177 79.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Saliphagus Saliphagus sp. LR7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;