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contig_metadata

30 rows where analysis = "diamond", bioproject = "PRJNA415856" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 30 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA415856 · 30 ✖

analysis 1

  • diamond · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21485049 21485049 PRJNA415856_P_NODE_13397_length_237_cov_2.297872_g13136_i0 PRJNA415856 13397 237 2.297872 5.44595664 Metazoa 33208 Chordata Chordata 118 5.47e-31   NR XP_036103281.1 27622 g13136 i0 90.9 12.4810126582278 66 6 83.5 0 198 1 109 174 XP_036103281.1 histone H2A.V [Molossus molossus] diamond 2958 118 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Molossidae Molossus Molossus molossus
24035286 24035286 PRJNA415856_P_NODE_43059_length_164_cov_1.086957_g42798_i0 PRJNA415856 43059 164 1.086957 1.78260948 Ceratotherium simum simum 73337 Chordata Chordata 63.2 7.91e-10   NR XP_014638719.1 73337 g42798 i0 64 9.65853658536585 50 18 91.5 0 15 164 120 169 XP_014638719.1 PREDICTED: LOW QUALITY PROTEIN: heat shock 70 kDa protein 6-like [Ceratotherium simum simum] diamond 1584 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Rhinocerotidae Ceratotherium Ceratotherium simum
26632418 26632418 PRJNA415856_P_NODE_11521_length_259_cov_1.052381_g11260_i0 PRJNA415856 11521 259 1.052381 2.72566679 Bufotes viridis 30338 Chordata Chordata 42.7 0.0437   NR CAK8629749.1 30338 g11260 i0 50 1.01930501930502 36 18 41.7 0 121 14 329 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 264 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
26871067 26871067 PRJNA415856_P_NODE_27261_length_179_cov_1.430769_g27000_i0 PRJNA415856 27261 179 1.430769 2.56107651 root 1 Root_unresolved Root_unresolved 122 1.2e-30   NR XP_030110853.2 10090 g27000 i0 100 16.8100558659218 59 0 98.9 0 179 3 135 193 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 3009 122 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27075551 27075551 PRJNA415856_P_NODE_11582_length_258_cov_1.315789_g11321_i0 PRJNA415856 11582 258 1.315789 3.39473562 Staurois parvus 386267 Chordata Chordata 69.3 4.62e-13   NR CAI9618505.1 386267 g11321 i0 43.5 0.988372093023256 85 43 95.3 2 11 256 2 84 CAI9618505.1 unnamed protein product, partial [Staurois parvus] diamond 255 69.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
27265311 27265311 PRJNA415856_P_NODE_54063_length_158_cov_2.532110_g53802_i0 PRJNA415856 54063 158 2.53211 4.0007338 Gulo gulo 48420 Chordata Chordata 39.7 0.0315   NR VCX43222.1 48420 g53802 i0 72 0.474683544303797 25 7 47.5 0 146 72 37 61 VCX43222.1 unnamed protein product [Gulo gulo] diamond 75 39.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Gulo Gulo gulo
27612809 27612809 PRJNA415856_P_NODE_38524_length_166_cov_0.871795_g38263_i0 PRJNA415856 38524 166 0.871795 1.4471797 Staurois parvus 386267 Chordata Chordata 47.8 2.09e-5   NR CAI9540006.1 386267 g38263 i0 57.1 0.632530120481928 35 15 63.3 0 40 144 4 38 CAI9540006.1 unnamed protein product, partial [Staurois parvus] diamond 105 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28180754 28180754 PRJNA415856_P_NODE_18206_length_204_cov_1.974194_g17945_i0 PRJNA415856 18206 204 1.974194 4.02735576 Lynx pardinus 191816 Chordata Chordata 42.4 0.0294   NR VFV37723.1 191816 g17945 i0 54 0.735294117647059 50 23 73.5 0 191 42 4 53 VFV37723.1 Hypothetical predicted protein [Lynx pardinus] diamond 150 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Lynx Lynx pardinus
28465293 28465293 PRJNA415856_P_NODE_31486_length_172_cov_1.357724_g31225_i0 PRJNA415856 31486 172 1.357724 2.33528528 Heterocephalus glaber 10181 Chordata Chordata 47 4.69e-4   NR XP_012926343.1 10181 g31225 i0 65.4 0.906976744186046 26 9 45.3 0 96 19 154 179 XP_012926343.1 uncharacterized protein KIAA1107 homolog isoform X1 [Heterocephalus glaber] diamond 156 47 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Heterocephalus Heterocephalus glaber
28623189 28623189 PRJNA415856_P_NODE_6947_length_355_cov_2.183007_g6686_i0 PRJNA415856 6947 355 2.183007 7.74967485 Staurois parvus 386267 Chordata Chordata 55.1 8.29e-7   NR CAI9548327.1 386267 g6686 i0 57.4 1.7830985915493 54 18 41.4 1 252 106 47 100 CAI9548327.1 unnamed protein product [Staurois parvus] diamond 633 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28654654 28654654 PRJNA415856_P_NODE_54347_length_156_cov_3.112150_g54086_i0 PRJNA415856 54347 156 3.11215 4.854954 Polypterus senegalus 55291 Chordata Chordata 55.8 2.56e-7   NR KAG2460115.1 55291 g54086 i0 48.8 1.65384615384615 43 22 82.7 0 154 26 244 286 KAG2460115.1 TCB1 transposase, partial [Polypterus senegalus] diamond 258 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29128475 29128475 PRJNA415856_P_NODE_45969_length_163_cov_0.894737_g45708_i0 PRJNA415856 45969 163 0.894737 1.45842131 Staurois parvus 386267 Chordata Chordata 47.4 5.32e-5   NR CAI9547784.1 386267 g45708 i0 43.1 0.938650306748466 51 29 93.9 0 6 158 34 84 CAI9547784.1 unnamed protein product, partial [Staurois parvus] diamond 153 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
29254292 29254292 PRJNA415856_P_NODE_47169_length_163_cov_0.894737_g46908_i0 PRJNA415856 47169 163 0.894737 1.45842131 Hippopotamus amphibius kiboko 575201 Chordata Chordata 43.9 0.00326   NR XP_057555276.1 575201 g46908 i0 67.7 0.570552147239264 31 10 57.1 0 63 155 4 34 XP_057555276.1 diphosphoinositol polyphosphate phosphohydrolase 1 isoform X1 [Hippopotamus amphibius kiboko] diamond 93 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Hippopotamidae Hippopotamus Hippopotamus amphibius
29507014 29507014 PRJNA415856_P_NODE_31950_length_171_cov_1.672131_g31689_i0 PRJNA415856 31950 171 1.672131 2.85934401 Vulpes lagopus 494514 Chordata Chordata 41.2 0.0472   NR XP_041589014.1 494514 g31689 i0 48.6 0.614035087719298 35 16 61.4 1 29 133 211 243 XP_041589014.1 tumor protein p63-regulated gene 1-like protein [Vulpes lagopus] diamond 105 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Vulpes Vulpes lagopus
30107061 30107061 PRJNA415856_P_NODE_28392_length_177_cov_1.507812_g28131_i0 PRJNA415856 28392 177 1.507812 2.66882724 Pipistrellus kuhlii 59472 Chordata Chordata 62.4 1.75e-9   NR KAF6392601.1 59472 g28131 i0 66.7 1.42372881355932 42 14 71.2 0 51 176 477 518 KAF6392601.1 hypothetical protein mPipKuh1_007790 [Pipistrellus kuhlii] diamond 252 62.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Pipistrellus Pipistrellus kuhlii
30960313 30960313 PRJNA415856_P_NODE_22614_length_188_cov_1.201439_g22353_i0 PRJNA415856 22614 188 1.201439 2.25870532 Oryctolagus cuniculus 9986 Chordata Chordata 79.3 2.27e-15   NR XP_069915432.1 9986 g22353 i0 60.7 2.93617021276596 61 24 97.3 0 2 184 199 259 XP_069915432.1 LOW QUALITY PROTEIN: lysosomal alpha-mannosidase [Oryctolagus cuniculus] diamond 552 79.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
31071799 31071799 PRJNA415856_P_NODE_35495_length_167_cov_0.864407_g35234_i0 PRJNA415856 35495 167 0.864407 1.44355969 Mammalia 40674 Chordata Chordata 41.2 0.046   NR KAF0883015.1 9678 g35234 i0 52.6 2.73053892215569 38 18 68.3 0 51 164 170 207 KAF0883015.1 LORF2 protein, partial [Crocuta crocuta] diamond 456 41.6 0.990384615384615 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
31117979 31117979 PRJNA415856_P_NODE_49475_length_162_cov_0.902655_g49214_i0 PRJNA415856 49475 162 0.902655 1.4623011 Aquarana catesbeiana 8400 Chordata Chordata 49.7 4.19e-5   NR PIO38058.1 8400 g49214 i0 83.3 0.444444444444444 24 4 44.4 0 91 162 228 251 PIO38058.1 hypothetical protein AB205_0207700, partial [Aquarana catesbeiana] diamond 72 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Aquarana Aquarana catesbeiana
31117981 31117981 PRJNA415856_P_NODE_51235_length_161_cov_1.517857_g50974_i0 PRJNA415856 51235 161 1.517857 2.44374977 Balaenoptera physalus 9770 Chordata Chordata 47.4 2.17e-4   NR KAB0402060.1 9770 g50974 i0 60 0.838509316770186 45 16 83.9 1 154 20 131 173 KAB0402060.1 hypothetical protein E2I00_001188 [Balaenoptera physalus] diamond 135 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera physalus
31371357 31371357 PRJNA415856_P_NODE_48516_length_162_cov_1.345133_g48255_i0 PRJNA415856 48516 162 1.345133 2.17911546 Crocuta crocuta 9678 Chordata Chordata 43.1 0.00287   NR KAF0881499.1 9678 g48255 i0 63.2 0.703703703703704 38 13 70.4 1 147 34 69 105 KAF0881499.1 LORF2 protein, partial [Crocuta crocuta] diamond 114 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
31387975 31387975 PRJNA415856_P_NODE_45236_length_163_cov_2.052632_g44975_i0 PRJNA415856 45236 163 2.052632 3.34579016 Metazoa 33208 Chordata Chordata 74.7 1.4e-14   NR XP_035690673.1 7739 g44975 i0 75.5 3.90184049079755 53 13 97.5 0 3 161 108 160 XP_035690673.1 malate dehydrogenase, mitochondrial-like isoform X2 [Branchiostoma floridae] diamond 636 75.1 0.994673768308922 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
31497824 31497824 PRJNA415856_P_NODE_13416_length_237_cov_1.760638_g13155_i0 PRJNA415856 13416 237 1.760638 4.17271206 Erpetoichthys calabaricus 27687 Chordata Chordata 95.1 3.27e-21   NR XP_051791274.1 27687 g13155 i0 80.3 5.40506329113924 61 11 75.9 1 180 1 125 185 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 1281 95.1 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
31529465 31529465 PRJNA415856_P_NODE_9196_length_296_cov_0.979757_g8935_i0 PRJNA415856 9196 296 0.979757 2.90008072 Engystomops pustulosus 76066 Chordata Chordata 95.5 2.09e-20   NR KAG8571490.1 76066 g8935 i0 58.5 33.597972972973 65 27 65.9 0 102 296 1112 1176 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 9945 95.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
31546111 31546111 PRJNA415856_P_NODE_14276_length_229_cov_4.011111_g14015_i0 PRJNA415856 14276 229 4.011111 9.18544419 Metazoa 33208 Chordata Chordata 148 3.24e-42   NR KYO18542.1 8496 g14015 i0 88.2 17.9213973799127 76 9 99.6 0 229 2 43 118 KYO18542.1 hypothetical protein Y1Q_0014804 [Alligator mississippiensis] diamond 4104 148 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
31592766 31592766 PRJNA415856_P_NODE_50056_length_162_cov_0.902655_g49795_i0 PRJNA415856 50056 162 0.902655 1.4623011 Equus caballus 9796 Chordata Chordata 68.9 6.09e-12   NR XP_070102340.1 9796 g49795 i0 76.4 1.01851851851852 55 11 98.1 1 2 160 73 127 XP_070102340.1 DNA excision repair protein ERCC-8 isoform X2 [Equus caballus] diamond 165 68.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
31655644 31655644 PRJNA415856_P_NODE_48197_length_162_cov_1.743363_g47936_i0 PRJNA415856 48197 162 1.743363 2.82424806 Equus quagga 89248 Chordata Chordata 58.2 1.26e-8   NR XP_046520696.1 89248 g47936 i0 75 0.592592592592593 32 8 59.3 0 53 148 5 36 XP_046520696.1 probable gluconokinase isoform X4 [Equus quagga] diamond 96 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus quagga
32035439 32035439 PRJNA415856_P_NODE_20878_length_192_cov_1.097902_g20617_i0 PRJNA415856 20878 192 1.097902 2.10797184 Candoia aspera 51853 Chordata Chordata 41.2 0.0201   NR XP_063148187.1 51853 g20617 i0 40.4 0.734375 47 27 71.9 1 42 179 7 53 XP_063148187.1 HIG1 domain family member 2A, mitochondrial [Candoia aspera] diamond 141 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Boidae Candoia Candoia aspera
32305515 32305515 PRJNA415856_P_NODE_13739_length_234_cov_1.529730_g13478_i0 PRJNA415856 13739 234 1.52973 3.5795682 Anura 8342 Chordata Chordata 70.5 5.47e-12   NR OCT79603.1 8355 g13478 i0 66.7 3.29487179487179 51 17 65.4 0 232 80 584 634 OCT79603.1 hypothetical protein XELAEV_18026411mg [Xenopus laevis] diamond 771 70.9 0.994358251057828 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
32305517 32305517 PRJNA415856_P_NODE_29119_length_176_cov_1.220472_g28858_i0 PRJNA415856 29119 176 1.220472 2.14803072 root 1 Root_unresolved Root_unresolved 60.1 1.15e-8   NR KAI5932745.1 9974 g28858 i0 59.6 7.99431818181818 52 21 88.6 0 171 16 480 531 KAI5932745.1 LINE-1 retrotransposable element ORF2 protein [Manis javanica] diamond 1407 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis javanica
32699128 32699128 PRJNA415856_P_NODE_36660_length_167_cov_0.864407_g36399_i0 PRJNA415856 36660 167 0.864407 1.44355969 Molossus molossus 27622 Chordata Chordata 40.8 0.0343   NR KAF6469833.1 27622 g36399 i0 46.9 0.880239520958084 49 25 88 1 2 148 59 106 KAF6469833.1 hypothetical protein HJG59_011190 [Molossus molossus] diamond 147 40.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Molossidae Molossus Molossus molossus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;