RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA415856" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA415856 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26917386 26917386 PRJNA415856_P_NODE_46282_length_163_cov_0.894737_g46021_i0 PRJNA415856 46282 163 0.894737 1.45842131 Leptotrichia sp. oral taxon 215 712359 Bacteria Bacteria 90.9 3.35e-20   NR WP_036100075.1 712359 g46021 i0 81.5 0.993865030674847 54 10 99.4 0 162 1 146 199 WP_036100075.1 rod shape-determining protein MreC [Leptotrichia sp. oral taxon 215] diamond 162 90.9 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 215
27896720 27896720 PRJNA415856_P_NODE_43685_length_164_cov_0.886957_g43424_i0 PRJNA415856 43685 164 0.886957 1.45460948 Leptotrichia sp. oral taxon 215 712359 Bacteria Bacteria 90.5 4.8e-20   NR WP_021766657.1 712359 g43424 i0 83.3 0.98780487804878 54 9 98.8 0 1 162 17 70 WP_021766657.1 tRNA-dihydrouridine synthase family protein [Leptotrichia sp. oral taxon 215] diamond 162 90.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 215
28197479 28197479 PRJNA415856_P_NODE_40766_length_165_cov_0.879310_g40505_i0 PRJNA415856 40766 165 0.87931 1.4508615 Fusobacterium 848 Bacteria Bacteria 98.6 2.74e-22   NR WP_320949997.1 68766 g40505 i0 87 1.96363636363636 54 7 98.2 0 164 3 206 259 WP_320949997.1 hypothetical protein, partial [Fusobacterium sp.] diamond 324 98.6 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
31940337 31940337 PRJNA415856_P_NODE_23717_length_186_cov_1.226277_g23456_i0 PRJNA415856 23717 186 1.226277 2.28087522 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 63.9 5.95e-10   NR WP_338945404.1 2663009 g23456 i0 85 0.645161290322581 40 6 64.5 0 186 67 406 445 WP_338945404.1 YARHG domain-containing protein [Fusobacterium pseudoperiodonticum] diamond 120 63.9 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;