RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA415636" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA415636 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30233538 30233538 PRJNA415636_S_NODE_4732_length_233_cov_1.370968_g4685_i0 PRJNA415636 4732 233 1.370968 3.19435544 Solemya velum gill symbiont 2340 Bacteria Bacteria 43.1 0.0232   NR WP_078456856.1 2340 g4685 i0 70.8 0.309012875536481 24 7 30.9 0 99 28 328 351 WP_078456856.1 reverse transcriptase domain-containing protein [Solemya velum gill symbiont] diamond 72 43.1 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Solemya velum gill symbiont
30360394 30360394 PRJNA415636_S_NODE_5272_length_223_cov_1.448864_g5225_i0 PRJNA415636 5272 223 1.448864 3.23096672 Alphaproteobacteria bacterium 1913988 Bacteria Bacteria 46.2 0.00151   NR TNE61774.1 1913988 g5225 i0 53.8 2.21973094170404 39 18 52.5 0 37 153 210 248 TNE61774.1 MAG: electron transfer flavoprotein subunit beta/FixA family protein [Alphaproteobacteria bacterium] diamond 495 46.2 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria       Alphaproteobacteria bacterium
31624133 31624133 PRJNA415636_S_NODE_5836_length_214_cov_1.526946_g5789_i0 PRJNA415636 5836 214 1.526946 3.26766444 Escherichia coli 562 Bacteria Bacteria 80.5 1.16e-17   NR WP_329792810.1 562 g5789 i0 57.4 2.56542056074766 61 26 85.5 0 196 14 23 83 WP_329792810.1 hypothetical protein, partial [Escherichia coli] diamond 549 80.5 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;