RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA415636" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA415636 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29854485 29854485 PRJNA415636_S_NODE_4031_length_248_cov_2.273632_g3984_i0 PRJNA415636 4031 248 2.273632 5.63860736 Mycoplasma wenyonii 65123 Bacteria Bacteria 94 1.84e-20   NR WP_112665897.1 65123 g3984 i0 56.4 0.943548387096774 78 34 94.4 0 234 1 262 339 WP_112665897.1 restriction endonuclease subunit S [Mycoplasma wenyonii] diamond 234 94 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
30517906 30517906 PRJNA415636_S_NODE_3613_length_259_cov_0.995283_g3566_i0 PRJNA415636 3613 259 0.995283 2.57778297 Mycoplasma wenyonii 65123 Bacteria Bacteria 139 3.1500000000000004e-36   NR WP_112664927.1 65123 g3566 i0 81.4 0.996138996138996 86 16 99.6 0 259 2 133 218 WP_112664927.1 DNA gyrase/topoisomerase IV subunit B [Mycoplasma wenyonii] diamond 258 139 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
31055321 31055321 PRJNA415636_S_NODE_2755_length_287_cov_1.525000_g2708_i0 PRJNA415636 2755 287 1.525 4.37675 Mycoplasma wenyonii 65123 Bacteria Bacteria 73.2 5.52e-13   NR RAO95294.1 65123 g2708 i0 97.1 0.710801393728223 34 1 35.5 0 95 196 203 236 RAO95294.1 modification methylase HemK [Mycoplasma wenyonii] diamond 204 73.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;