RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA415636" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA415636 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5522887 5522887 PRJNA415636_S_NODE_3785_length_254_cov_2.135266_g3738_i0 PRJNA415636 3785 254 2.135266 5.42357564 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 109 4.55e-28   NR CAD8167353.1 43137 g3738 i0 63.4 7.77165354330709 82 30 96.9 0 253 8 71 152 CAD8167353.1 unnamed protein product [Paramecium octaurelia] diamond 1974 110 0.990909090909091 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia
31451183 31451183 PRJNA415636_S_NODE_3996_length_249_cov_1.767327_g3949_i0 PRJNA415636 3996 249 1.767327 4.40064423 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 65.1 4.87e-10   NR XP_001026118.2 312017 g3949 i0 63.8 1.69879518072289 47 17 56.6 0 5 145 335 381 XP_001026118.2 transmembrane protein, putative, partial [Tetrahymena thermophila SB210] diamond 423 65.1 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
32035435 32035435 PRJNA415636_S_NODE_5278_length_223_cov_1.159091_g5231_i0 PRJNA415636 5278 223 1.159091 2.58477293 Tetrahymena utriculariae 2486642 SAR_Eukaryotes SAR_Eukaryotes 107 6.25e-25   NR KAL4485779.1 2486642 g5231 i0 75 2.58295964125561 64 16 86.1 0 192 1 116 179 KAL4485779.1 hypothetical protein ABPG72_012319 [Tetrahymena utriculariae] diamond 576 107 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena utriculariae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;