contig_metadata
6 rows where analysis = "diamond", bioproject = "PRJNA415636" and tax_kingdom = "Bacillati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27612797 | 27612797 | PRJNA415636_S_NODE_5384_length_221_cov_2.086207_g5337_i0 | PRJNA415636 | 5384 | 221 | 2.086207 | 4.61051747 | Actinomycetota bacterium | 2900548 | Bacteria | Bacteria | 53.5 | 1.91e-6 | NR | MEY2477645.1 | 2900548 | g5337 | i0 | 42.3 | 1.91402714932127 | 71 | 41 | 96.4 | 0 | 214 | 2 | 78 | 148 | MEY2477645.1 hypothetical protein [Actinomycetota bacterium] | diamond | 423 | 53.5 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetota bacterium | ||||||
| 27770744 | 27770744 | PRJNA415636_S_NODE_2104_length_318_cov_2.719557_g2057_i0 | PRJNA415636 | 2104 | 318 | 2.719557 | 8.64819126 | Phototrophicaceae bacterium | 3069543 | Bacteria | Bacteria | 93.6 | 4.22e-21 | NR | HEX2906967.1 | 3069543 | g2057 | i0 | 43.6 | 0.952830188679245 | 101 | 56 | 95.3 | 1 | 303 | 1 | 95 | 194 | HEX2906967.1 isoprenylcysteine carboxylmethyltransferase family protein [Phototrophicaceae bacterium] | diamond | 303 | 93.6 | 1 | Bacteria | Bacillati | Chloroflexota | Candidatus Thermofontia | Phototrophicales | Phototrophicaceae | Phototrophicaceae bacterium | |||
| 29854485 | 29854485 | PRJNA415636_S_NODE_4031_length_248_cov_2.273632_g3984_i0 | PRJNA415636 | 4031 | 248 | 2.273632 | 5.63860736 | Mycoplasma wenyonii | 65123 | Bacteria | Bacteria | 94 | 1.84e-20 | NR | WP_112665897.1 | 65123 | g3984 | i0 | 56.4 | 0.943548387096774 | 78 | 34 | 94.4 | 0 | 234 | 1 | 262 | 339 | WP_112665897.1 restriction endonuclease subunit S [Mycoplasma wenyonii] | diamond | 234 | 94 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Mycoplasma | Mycoplasma wenyonii | ||
| 30265440 | 30265440 | PRJNA415636_S_NODE_3832_length_253_cov_1.800971_g3785_i0 | PRJNA415636 | 3832 | 253 | 1.800971 | 4.55645663 | Neobacillus cucumis | 1740721 | Bacteria | Bacteria | 111 | 1.81e-26 | NR | WP_180960453.1 | 1740721 | g3785 | i0 | 59.5 | 1.99209486166008 | 84 | 34 | 99.6 | 0 | 2 | 253 | 103 | 186 | WP_180960453.1 C39 family peptidase [Neobacillus cucumis] | diamond | 504 | 111 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Neobacillus | Neobacillus cucumis | ||
| 30517906 | 30517906 | PRJNA415636_S_NODE_3613_length_259_cov_0.995283_g3566_i0 | PRJNA415636 | 3613 | 259 | 0.995283 | 2.57778297 | Mycoplasma wenyonii | 65123 | Bacteria | Bacteria | 139 | 3.1500000000000004e-36 | NR | WP_112664927.1 | 65123 | g3566 | i0 | 81.4 | 0.996138996138996 | 86 | 16 | 99.6 | 0 | 259 | 2 | 133 | 218 | WP_112664927.1 DNA gyrase/topoisomerase IV subunit B [Mycoplasma wenyonii] | diamond | 258 | 139 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Mycoplasma | Mycoplasma wenyonii | ||
| 31055321 | 31055321 | PRJNA415636_S_NODE_2755_length_287_cov_1.525000_g2708_i0 | PRJNA415636 | 2755 | 287 | 1.525 | 4.37675 | Mycoplasma wenyonii | 65123 | Bacteria | Bacteria | 73.2 | 5.52e-13 | NR | RAO95294.1 | 65123 | g2708 | i0 | 97.1 | 0.710801393728223 | 34 | 1 | 35.5 | 0 | 95 | 196 | 203 | 236 | RAO95294.1 modification methylase HemK [Mycoplasma wenyonii] | diamond | 204 | 73.2 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Mycoplasma | Mycoplasma wenyonii |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;