RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA414225" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA414225 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27739294 27739294 PRJNA414225_P_NODE_32664_length_177_cov_1.562500_g32577_i0 PRJNA414225 32664 177 1.5625 2.765625 Oligoflexus sp. 1971216 Bacteria Bacteria 75.5 3.07e-14   NR MBC7662034.1 1971216 g32577 i0 92.3 1.32203389830508 39 3 66.1 0 3 119 299 337 MBC7662034.1 hypothetical protein [Oligoflexus sp.] diamond 234 75.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
27818911 27818911 PRJNA414225_P_NODE_69884_length_164_cov_1.330435_g69797_i0 PRJNA414225 69884 164 1.330435 2.1819134 Bdellovibrio 958 Bacteria Bacteria 105 7.39e-25   NR WP_374076363.1 959 g69797 i0 90.7 1.97560975609756 54 5 98.8 0 2 163 596 649 WP_374076363.1 RHS repeat-associated core domain-containing protein [Bdellovibrio bacteriovorus] diamond 324 105 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
29507002 29507002 PRJNA414225_P_NODE_87630_length_162_cov_0.902655_g87543_i0 PRJNA414225 87630 162 0.902655 1.4623011 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 68.2 7.97e-12   NR MCB0403216.1 2053517 g87543 i0 58.5 1.96296296296296 53 22 98.1 0 4 162 212 264 MCB0403216.1 tetratricopeptide repeat protein [Bdellovibrionales bacterium] diamond 318 68.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30960300 30960300 PRJNA414225_P_NODE_57994_length_166_cov_0.871795_g57907_i0 PRJNA414225 57994 166 0.871795 1.4471797 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 69.3 3.25e-12   NR MES2854864.1 3034175 g57907 i0 63.5 0.939759036144578 52 19 94 0 158 3 1 52 MES2854864.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA [Bdellovibrionota bacterium] diamond 156 69.3 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31845470 31845470 PRJNA414225_P_NODE_20517_length_187_cov_1.478261_g20430_i0 PRJNA414225 20517 187 1.478261 2.76434807 Bdellovibrio 958 Bacteria Bacteria 52.8 4.94e-6   NR WP_284604157.1 958 g20430 i0 55.8 2.45454545454545 52 22 81.8 1 155 3 2 53 WP_284604157.1 MULTISPECIES: translocation protein TolB [Bdellovibrio] diamond 459 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio  
32193725 32193725 PRJNA414225_P_NODE_20118_length_187_cov_1.478261_g20031_i0 PRJNA414225 20118 187 1.478261 2.76434807 Bdellovibrio svalbardensis 2972972 Bacteria Bacteria 95.9 1.9e-23   NR WP_277576925.1 2972972 g20031 i0 70.5 0.978609625668449 61 18 97.9 0 185 3 42 102 WP_277576925.1 hypothetical protein [Bdellovibrio svalbardensis] diamond 183 95.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio svalbardensis
32193727 32193727 PRJNA414225_P_NODE_52278_length_167_cov_0.864407_g52191_i0 PRJNA414225 52278 167 0.864407 1.44355969 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 95.5 4.43e-22   NR WP_262553173.1 959 g52191 i0 92.6 2.91017964071856 54 4 97 0 2 163 50 103 WP_262553173.1 UbiA family prenyltransferase [Bdellovibrio bacteriovorus] diamond 486 95.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
32636038 32636038 PRJNA414225_P_NODE_22140_length_185_cov_3.522059_g22053_i0 PRJNA414225 22140 185 3.522059 6.51580915 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 102 4.39e-24   NR NQZ02179.1 2053517 g22053 i0 86.2 1.92972972972973 58 8 94.1 0 176 3 255 312 NQZ02179.1 Holliday junction branch migration DNA helicase RuvB [Bdellovibrionales bacterium] diamond 357 102 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;