RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA414225" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA414225 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27581004 27581004 PRJNA414225_P_NODE_64724_length_165_cov_0.879310_g64637_i0 PRJNA414225 64724 165 0.87931 1.4508615 Lepeophtheirus salmonis 72036 Arthropoda Arthropoda 45.8 0.0011   NR CAB4064498.1 72036 g64637 i0 52.6 0.690909090909091 38 18 69.1 0 1 114 449 486 CAB4064498.1 RICTOR [Lepeophtheirus salmonis] diamond 114 45.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Hexanauplia Siphonostomatoida Caligidae Lepeophtheirus Lepeophtheirus salmonis
32368739 32368739 PRJNA414225_P_NODE_1239_length_372_cov_2.052632_g1152_i0 PRJNA414225 1239 372 2.052632 7.63579104 root 1 Root_unresolved Root_unresolved 53.1 3.67e-5   NR GBN61280.1 182803 g1152 i0 50.9 3.93548387096774 53 26 42.7 0 284 126 1136 1188 GBN61280.1 putative RNA-directed DNA polymerase from transposon X-element [Araneus ventricosus] diamond 1464 53.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Araneae Araneidae Araneus Araneus ventricosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;