RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA414036" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA414036 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30439930 30439930 PRJNA414036_P_NODE_71513_length_179_cov_15.229167_g69774_i0 PRJNA414036 71513 179 15.229167 27.26020893 PVC group 1783257 Bacteria Bacteria 58.9 1.69e-8   NR WP_235655314.1 2094 g69774 i0 52.8 1.77653631284916 53 25 88.8 0 170 12 86 138 WP_235655314.1 hypothetical protein [Mycoplasmopsis arginini] diamond 318 58.9 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
31292829 31292829 PRJNA414036_P_NODE_20155_length_336_cov_4.813953_g18429_i0 PRJNA414036 20155 336 4.813953 16.17488208 FCB group 1783270 Bacteria Bacteria 50.4 2.15e-5   NR ALA98050.1 273035 g18429 i0 80 0.535714285714286 30 6 26.8 0 244 333 6 35 ALA98050.1 hypothetical protein SKUN_001166 [Spiroplasma kunkelii CR2-3x] diamond 180 50.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma kunkelii
31988727 31988727 PRJNA414036_P_NODE_36858_length_243_cov_59.495192_g35122_i0 PRJNA414036 36858 243 59.495192 144.57331656 root 1 Root_unresolved Root_unresolved 51.2 9.99e-6   NR SGA27231.1 2094 g35122 i0 39.7 1.62962962962963 73 44 90.1 0 17 235 54 126 SGA27231.1 Uncharacterised protein [Mycoplasmopsis arginini] diamond 396 51.6 0.992248062015504 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;