RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA414036" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA414036 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28023185 28023185 PRJNA414036_P_NODE_29525_length_276_cov_21.755187_g27790_i0 PRJNA414036 29525 276 21.755187 60.04431612 Thermotoga sp. TBYP3.1.4.1 1587550 Bacteria Bacteria 50.8 7e-5   NR AJA38639.1 1587550 g27790 i0 41.8 0.858695652173913 79 43 82.6 1 245 18 229 307 AJA38639.1 hypothetical protein [Thermotoga sp. TBYP3.1.4.1] diamond 237 50.8 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga sp. TBYP3.1.4.1
30675711 30675711 PRJNA414036_P_NODE_22673_length_318_cov_4.607774_g20942_i0 PRJNA414036 22673 318 4.607774 14.65272132 Deinococcus radiodurans R1 = ATCC 13939 = DSM 2 243230 Bacteria Bacteria 53.1 3.59e-6   NR AAF11800.1 243230 g20942 i0 37.1 1.30188679245283 89 55 83 1 266 3 5 93 AAF11800.1 hypothetical protein DR_2252 [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539] diamond 414 53.1 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;