RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA414036" and tax_clade = "marine Actinobacteria clade"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • marine Actinobacteria clade · 1 ✖

bioproject 1

  • PRJNA414036 · 1 ✖

analysis 1

  • diamond · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27770721 27770721 PRJNA414036_P_NODE_18244_length_351_cov_422.509494_g16530_i0 PRJNA414036 18244 351 422.509494 1483.00832394 uncultured actinobacterium HF 152507 Bacteria Bacteria 57.4 3.29e-7   NR ADI22944.1 723604 g16530 i0 40.4 1.1965811965812 94 55 79.5 1 45 323 85 178 ADI22944.1 hypothetical protein [uncultured actinobacterium HF0500_35G12] diamond 420 57.4 1 Bacteria marine Actinobacteria clade Bacillati Actinomycetota Actinomycetes       uncultured actinobacterium HF0500_35G12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;