RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA414036" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA414036 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26871058 26871058 PRJNA414036_P_NODE_48661_length_231_cov_2.454082_g46922_i0 PRJNA414036 48661 231 2.454082 5.66892942 Eumycetozoa 142796 Evosea other_Eukaryota 42.7 0.0318   NR XP_004354889.1 261658 g46922 i0 90.5 1.09090909090909 21 2 27.3 0 220 158 356 376 XP_004354889.1 myb domain-containing protein [Cavenderia fasciculata] diamond 252 43.1 0.990719257540603 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
30612529 30612529 PRJNA414036_P_NODE_24593_length_305_cov_26.188889_g22861_i0 PRJNA414036 24593 305 26.188889 79.87611145 Rhizomastix elongata 1745345 Evosea other_Eukaryota 82 2.65e-16   NR ALM01580.1 1745345 g22861 i0 64.4 2.65573770491803 101 36 99.3 0 305 3 12 112 ALM01580.1 actin, partial [Rhizomastix elongata] diamond 810 82 1 Eukaryota Amoebozoa   Evosea       Rhizomastix Rhizomastix elongata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;