RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA407886" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA407886 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10621400 10621400 PRJNA407886_P_NODE_46069_length_319_cov_1.536585_g44375_i0 PRJNA407886 46069 319 1.536585 4.90170615 Mesotoga sp. 2053577 Bacteria Bacteria 154 1.23e-41   NR MCB1222954.1 2053577 g44375 i0 67.9 2.98119122257053 106 34 99.7 0 2 319 148 253 MCB1222954.1 molecular chaperone DnaK [Mesotoga sp.] diamond 951 154 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga sp.
28528463 28528463 PRJNA407886_P_NODE_73527_length_248_cov_0.880000_g71833_i0 PRJNA407886 73527 248 0.88 2.1824 Synergistaceae bacterium 2053624 Bacteria Bacteria 42.7 0.036   NR MBR0080743.1 2053624 g71833 i0 37.9 1.40322580645161 58 27 59.3 2 1 147 172 229 MBR0080743.1 DUF2156 domain-containing protein [Synergistaceae bacterium] diamond 348 42.7 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
29980744 29980744 PRJNA407886_P_NODE_31791_length_402_cov_1.395137_g30097_i0 PRJNA407886 31791 402 1.395137 5.60845074 Deinococcus hopiensis 309885 Bacteria Bacteria 229 1.34e-70   NR WP_170928889.1 309885 g30097 i0 78.2 0.992537313432836 133 29 99.3 0 400 2 130 262 WP_170928889.1 glycoside hydrolase family 30 protein [Deinococcus hopiensis] diamond 399 229 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus hopiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;