RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA407368" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA407368 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27802127 27802127 PRJNA407368_S_NODE_9564_length_161_cov_2.863636_g9462_i0 PRJNA407368 9564 161 2.863636 4.61045396 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 49.3 5.82e-5   NR XP_004336616.1 1257118 g9462 i0 68.8 1.15527950310559 32 10 59.6 0 106 11 7 38 XP_004336616.1 ribosomal protein L10, putative [Acanthamoeba castellanii str. Neff] diamond 186 49.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31750454 31750454 PRJNA407368_S_NODE_7557_length_188_cov_3.150943_g7455_i0 PRJNA407368 7557 188 3.150943 5.92377284 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 82.4 1.87e-16   NR XP_004356787.1 1257118 g7455 i0 60.6 1.0531914893617 66 22 98.9 1 188 3 518 583 XP_004356787.1 IQGAPrelated protein [Acanthamoeba castellanii str. Neff] diamond 198 82.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;