RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA407368" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA407368 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27391692 27391692 PRJNA407368_S_NODE_5503_length_232_cov_13.270936_g5401_i0 PRJNA407368 5503 232 13.270936 30.78857152 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 124 4.929999999999999e-31   NR MCB0392645.1 2053517 g5401 i0 79.7 0.956896551724138 74 15 95.7 0 224 3 476 549 MCB0392645.1 cytochrome c biogenesis protein CcsA [Bdellovibrionales bacterium] diamond 222 124 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29285823 29285823 PRJNA407368_S_NODE_9169_length_166_cov_2.452555_g9067_i0 PRJNA407368 9169 166 2.452555 4.0712413 Bdellovibrio sp. 28201 Bacteria Bacteria 59.3 4.78e-9   NR MFM6930298.1 28201 g9067 i0 48.1 0.975903614457831 54 28 97.6 0 165 4 109 162 MFM6930298.1 MarR family winged helix-turn-helix transcriptional regulator [Bdellovibrio sp.] diamond 162 59.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
32604666 32604666 PRJNA407368_S_NODE_1780_length_468_cov_4.457859_g1683_i0 PRJNA407368 1780 468 4.457859 20.86278012 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 70.9 6.84e-11   NR MBK7960150.1 2053517 g1683 i0 38.2 0.83974358974359 131 73 79.5 4 82 453 813 942 MBK7960150.1 DUF2341 domain-containing protein [Bdellovibrionales bacterium] diamond 393 70.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;