RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA407368" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA407368 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16992531 16992531 PRJNA407368_S_NODE_10534_length_151_cov_2.827869_g10432_i0 PRJNA407368 10534 151 2.827869 4.27008219 Eukaryota 2759 Plants Plants 79.7 9.81e-16   NR KAK2079309.1 3111 g10432 i0 80 18.8741721854305 50 10 99.3 0 150 1 241 290 KAK2079309.1 70-kilodalton heat shock protein [Prototheca wickerhamii] diamond 2850 79.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
32887885 32887885 PRJNA407368_S_NODE_800_length_725_cov_16.553161_g734_i0 PRJNA407368 800 725 16.553161 120.01041725 Chlamydomonas sp. UWO 241 1653778 Plants Plants 139 6.22e-35   NR KAG1664378.1 1653778 g734 i0 81.6 0.31448275862069 76 14 31.4 0 580 353 164 239 KAG1664378.1 hypothetical protein FOA52_004711 [Chlamydomonas sp. UWO 241] diamond 228 139 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. UWO 241

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;