RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA407368" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA407368 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27802127 27802127 PRJNA407368_S_NODE_9564_length_161_cov_2.863636_g9462_i0 PRJNA407368 9564 161 2.863636 4.61045396 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 49.3 5.82e-5   NR XP_004336616.1 1257118 g9462 i0 68.8 1.15527950310559 32 10 59.6 0 106 11 7 38 XP_004336616.1 ribosomal protein L10, putative [Acanthamoeba castellanii str. Neff] diamond 186 49.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28892002 28892002 PRJNA407368_S_NODE_6628_length_206_cov_2.011299_g6526_i0 PRJNA407368 6628 206 2.011299 4.14327594 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 42.4 0.0135   NR XP_003292653.1 5786 g6526 i0 33.8 5.24271844660194 68 37 87.4 1 180 1 9 76 XP_003292653.1 uncharacterized protein DICPUDRAFT_12105, partial [Dictyostelium purpureum] diamond 1080 42.7 0.992974238875878 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
31750454 31750454 PRJNA407368_S_NODE_7557_length_188_cov_3.150943_g7455_i0 PRJNA407368 7557 188 3.150943 5.92377284 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 82.4 1.87e-16   NR XP_004356787.1 1257118 g7455 i0 60.6 1.0531914893617 66 22 98.9 1 188 3 518 583 XP_004356787.1 IQGAPrelated protein [Acanthamoeba castellanii str. Neff] diamond 198 82.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31845369 31845369 PRJNA407368_S_NODE_3637_length_307_cov_3.615108_g3535_i0 PRJNA407368 3637 307 3.615108 11.09838156 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 95.5 1.23e-20   NR PRP80056.1 1890364 g3535 i0 51.6 0.928338762214984 95 43 89.9 2 1 276 64 158 PRP80056.1 Adenylyl cyclase-associated protein 1 [Planoprotostelium fungivorum] diamond 285 95.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32667542 32667542 PRJNA407368_S_NODE_580_length_837_cov_9.206683_g527_i0 PRJNA407368 580 837 9.206683 77.05993671 Heterostelium album PN5 2086695 Evosea other_Eukaryota 270 2.03e-79   NR XP_020429359.1 670386 g527 i0 78.2 0.591397849462366 165 36 59.1 0 530 36 939 1103 XP_020429359.1 RabGAP/TBC domain-containing protein [Heterostelium album PN500] diamond 495 270 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
32730701 32730701 PRJNA407368_S_NODE_9800_length_158_cov_3.511628_g9698_i0 PRJNA407368 9800 158 3.511628 5.54837224 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 90.5 5.06e-20   NR PRP83562.1 1890364 g9698 i0 73.1 1.9746835443038 52 14 98.7 0 1 156 176 227 PRP83562.1 hypothetical protein PROFUN_09111 [Planoprotostelium fungivorum] diamond 312 90.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;