RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA407087" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA407087 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27612681 27612681 PRJNA407087_S_NODE_7544_length_177_cov_3.445946_g7081_i0 PRJNA407087 7544 177 3.445946 6.09932442 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 78.2 3.97e-15   NR XP_004346619.1 1257118 g7081 i0 64.3 5.71186440677966 56 20 94.9 0 2 169 309 364 XP_004346619.1 phosphoenolpyruvate carboxykinase [Acanthamoeba castellanii str. Neff] diamond 1011 78.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29664478 29664478 PRJNA407087_S_NODE_5850_length_209_cov_3.038889_g5387_i0 PRJNA407087 5850 209 3.038889 6.35127801 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 66.6 8.97e-11   NR XP_004337827.1 1257118 g5387 i0 52.3 9.90430622009569 65 30 91.9 1 209 18 608 672 XP_004337827.1 acylCoA synthetase, putative [Acanthamoeba castellanii str. Neff] diamond 2070 66.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29854370 29854370 PRJNA407087_S_NODE_7251_length_181_cov_3.157895_g6788_i0 PRJNA407087 7251 181 3.157895 5.71578995 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.5 2.36e-19   NR XP_004339270.1 1257118 g6788 i0 70 1.98895027624309 60 18 99.4 0 2 181 233 292 XP_004339270.1 Tcomplex protein 1, eta subunit [Acanthamoeba castellanii str. Neff] diamond 360 90.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30106938 30106938 PRJNA407087_S_NODE_9952_length_151_cov_2.024590_g9489_i0 PRJNA407087 9952 151 2.02459 3.0571309 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 59.7 9.97e-9   NR XP_004335025.1 1257118 g9489 i0 62.9 2.94039735099338 35 13 69.5 0 151 47 211 245 XP_004335025.1 RNA recognition motif domain containing protein [Acanthamoeba castellanii str. Neff] diamond 444 59.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30960180 30960180 PRJNA407087_S_NODE_2194_length_440_cov_3.829684_g1734_i0 PRJNA407087 2194 440 3.829684 16.8506096 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 183 8.049999999999998e-54   NR XP_004353078.1 1257118 g1734 i0 61.8 3.88636363636364 144 55 98.2 0 435 4 84 227 XP_004353078.1 meiotic recombinase Dmc1, putative [Acanthamoeba castellanii str. Neff] diamond 1710 183 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;