RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA407087" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA407087 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28338777 28338777 PRJNA407087_S_NODE_3006_length_353_cov_4.141975_g2544_i0 PRJNA407087 3006 353 4.141975 14.62117175 SAR324 cluster bacterium 2024889 Bacteria Bacteria 118 1.21e-28   NR MBF0276877.1 2024889 g2544 i0 51.7 0.985835694050991 116 55 97.7 1 5 349 172 287 MBF0276877.1 M20/M25/M40 family metallo-hydrolase [SAR324 cluster bacterium] diamond 348 118 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
30170095 30170095 PRJNA407087_S_NODE_672_length_914_cov_6.271186_g418_i0 PRJNA407087 672 914 6.271186 57.31864004 SAR324 cluster bacterium 2024889 Bacteria Bacteria 256 1.54e-78   NR MBF0276877.1 2024889 g418 i0 45 2.94420131291028 302 165 98.8 1 906 4 154 455 MBF0276877.1 M20/M25/M40 family metallo-hydrolase [SAR324 cluster bacterium] diamond 2691 256 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;