RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

33 rows where analysis = "diamond", bioproject = "PRJNA404067" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 33 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA404067 · 33 ✖

analysis 1

  • diamond · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4241618 4241618 PRJNA404067_P_NODE_21944_length_231_cov_1.211765_g21557_i0 PRJNA404067 21944 231 1.211765 2.79917715 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 131 2.32e-36   NR MES2922801.1 2026799 g21557 i0 81.3 4.87012987012987 75 14 97.4 0 227 3 134 208 MES2922801.1 spermine synthase [Verrucomicrobiota bacterium] diamond 1125 131 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
23366848 23366848 PRJNA404067_P_NODE_36899_length_203_cov_0.866197_g36512_i0 PRJNA404067 36899 203 0.866197 1.75837991 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 80.1 9.77e-17   NR MBU1692368.1 2026799 g36512 i0 74.5 1.74384236453202 55 14 81.3 0 6 170 28 82 MBU1692368.1 ORF6N domain-containing protein [Verrucomicrobiota bacterium] diamond 354 80.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26854178 26854178 PRJNA404067_P_NODE_35461_length_204_cov_0.895105_g35074_i0 PRJNA404067 35461 204 0.895105 1.8260142 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 132 4.18e-34   NR MBA3544777.1 2201154 g35074 i0 97 3.94117647058824 67 2 98.5 0 204 4 496 562 MBA3544777.1 DEAD/DEAH box helicase [Chthoniobacterales bacterium] diamond 804 132 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
27802105 27802105 PRJNA404067_P_NODE_40484_length_195_cov_2.029851_g40097_i0 PRJNA404067 40484 195 2.029851 3.95820945 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 118 3.9e-29   NR RYD67043.1 2026800 g40097 i0 92.2 0.984615384615385 64 5 98.5 0 194 3 39 102 RYD67043.1 MAG: hypothetical protein EOP83_03665, partial [Verrucomicrobiaceae bacterium] diamond 192 118 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27864961 27864961 PRJNA404067_P_NODE_20005_length_237_cov_0.971591_g19618_i0 PRJNA404067 20005 237 0.971591 2.30267067 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 68.9 2.08e-11   NR MDH4475261.1 2026800 g19618 i0 49.3 0.873417721518987 69 30 81 1 40 231 81 149 MDH4475261.1 redoxin domain-containing protein [Verrucomicrobiaceae bacterium] diamond 207 68.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27881788 27881788 PRJNA404067_P_NODE_39105_length_201_cov_0.878571_g38718_i0 PRJNA404067 39105 201 0.878571 1.76592771 Bacteria 2 Bacteria Bacteria 115 7.079999999999999e-28   NR MBK7997768.1 2026799 g38718 i0 75.8 1.97014925373134 66 16 98.5 0 2 199 319 384 MBK7997768.1 CRTAC1 family protein [Verrucomicrobiota bacterium] diamond 396 115 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28023081 28023081 PRJNA404067_P_NODE_21225_length_233_cov_1.197674_g20838_i0 PRJNA404067 21225 233 1.197674 2.79058042 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 136 2.7199999999999997e-35   NR MEQ1860304.1 2811408 g20838 i0 89.5 0.978540772532189 76 8 97.9 0 231 4 475 550 MEQ1860304.1 M28 family peptidase [Chthoniobacteraceae bacterium] diamond 228 136 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
28117590 28117590 PRJNA404067_P_NODE_41585_length_190_cov_2.503876_g41198_i0 PRJNA404067 41585 190 2.503876 4.7573644 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 80.9 6.47e-16   NR MEY2562396.1 2026799 g41198 i0 85.4 1.94210526315789 41 6 64.7 0 3 125 611 651 MEY2562396.1 system potassium uptake protein [Verrucomicrobiota bacterium] diamond 369 80.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28338769 28338769 PRJNA404067_P_NODE_37606_length_202_cov_0.907801_g37219_i0 PRJNA404067 37606 202 0.907801 1.83375802 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 65.1 2.79e-10   NR MEX1115076.1 2562705 g37219 i0 48.4 1.91584158415842 64 33 95 0 197 6 108 171 MEX1115076.1 DEAD/DEAH box helicase [Akkermansiaceae bacterium] diamond 387 65.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
29159846 29159846 PRJNA404067_P_NODE_35329_length_204_cov_1.272727_g34942_i0 PRJNA404067 35329 204 1.272727 2.59636308 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 82 2.02e-16   NR MBA2430855.1 2201154 g34942 i0 63.8 1.01470588235294 69 24 100 1 204 1 152 220 MBA2430855.1 J domain-containing protein [Chthoniobacterales bacterium] diamond 207 82 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
29222975 29222975 PRJNA404067_P_NODE_19389_length_239_cov_1.106742_g19002_i0 PRJNA404067 19389 239 1.106742 2.64511338 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 146 2.9999999999999998e-40   NR MFO1498268.1 2026799 g19002 i0 75.9 0.99163179916318 79 19 99.2 0 238 2 138 216 MFO1498268.1 beta-galactosidase [Verrucomicrobiota bacterium] diamond 237 146 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29443583 29443583 PRJNA404067_P_NODE_44190_length_172_cov_4.846847_g43803_i0 PRJNA404067 44190 172 4.846847 8.33657684 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 75.1 3.34e-14   NR MDX2080401.1 2832348 g43803 i0 77.3 2.30232558139535 44 10 76.7 0 2 133 66 109 MDX2080401.1 sugar phosphate isomerase/epimerase [Terrimicrobiaceae bacterium] diamond 396 75.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
29475083 29475083 PRJNA404067_P_NODE_18690_length_241_cov_3.338889_g18303_i0 PRJNA404067 18690 241 3.338889 8.04672249 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 128 3.32e-32   NR MBS0646509.1 2026799 g18303 i0 76.3 1.96680497925311 80 19 99.6 0 1 240 651 730 MBS0646509.1 restriction endonuclease subunit S [Verrucomicrobiota bacterium] diamond 474 128 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29632865 29632865 PRJNA404067_P_NODE_26430_length_219_cov_1.430380_g26043_i0 PRJNA404067 26430 219 1.43038 3.1325322 Luteolibacter luteus 2728835 Bacteria Bacteria 56.2 4.78e-7   NR WP_169457628.1 2728835 g26043 i0 38.9 0.986301369863014 72 44 98.6 0 3 218 48 119 WP_169457628.1 DNA/RNA non-specific endonuclease [Luteolibacter luteus] diamond 216 56.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
29776146 29776146 PRJNA404067_P_NODE_36111_length_203_cov_1.915493_g35724_i0 PRJNA404067 36111 203 1.915493 3.88845079 Prosthecobacter 48463 Bacteria Bacteria 103 4.53e-24   NR WP_395749669.1 1965333 g35724 i0 71.6 9.76847290640394 67 19 99 0 202 2 232 298 WP_395749669.1 sulfatase-like hydrolase/transferase [Prosthecobacter sp.] diamond 1983 103 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
30201568 30201568 PRJNA404067_P_NODE_34852_length_205_cov_0.875000_g34465_i0 PRJNA404067 34852 205 0.875 1.79375 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 92 8.62e-20   NR MEW6306920.1 2026799 g34465 i0 61.8 2.97073170731707 68 26 99.5 0 204 1 96 163 MEW6306920.1 polyphosphate:AMP phosphotransferase [Verrucomicrobiota bacterium] diamond 609 92 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30282103 30282103 PRJNA404067_P_NODE_24992_length_223_cov_1.197531_g24605_i0 PRJNA404067 24992 223 1.197531 2.67049413 Candidatus Udaeobacter 1921511 Bacteria Bacteria 147 7.95e-44   NR PYI80177.1 2026799 g24605 i0 97.2 4.84304932735426 72 2 96.9 0 3 218 46 117 PYI80177.1 MAG: hypothetical protein DMF05_07225 [Verrucomicrobiota bacterium] diamond 1080 147 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30376900 30376900 PRJNA404067_P_NODE_40652_length_194_cov_2.533835_g40265_i0 PRJNA404067 40652 194 2.533835 4.9156399 Luteolibacter 518753 Bacteria Bacteria 112 1.2e-27   NR WP_200351693.1 1144680 g40265 i0 92.2 3.92783505154639 64 5 99 0 192 1 122 185 WP_200351693.1 redox-regulated ATPase YchF [Luteolibacter yonseiensis] diamond 762 112 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter yonseiensis
30423331 30423331 PRJNA404067_P_NODE_20653_length_235_cov_0.879310_g20266_i0 PRJNA404067 20653 235 0.87931 2.0663785 Opitutaceae bacterium 2006848 Bacteria Bacteria 65.1 3.8e-10   NR HEY0966070.1 2006848 g20266 i0 63.3 0.625531914893617 49 18 62.6 0 183 37 195 243 HEY0966070.1 LLM class flavin-dependent oxidoreductase [Opitutaceae bacterium] diamond 147 65.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
30454927 30454927 PRJNA404067_P_NODE_36813_length_203_cov_0.866197_g36426_i0 PRJNA404067 36813 203 0.866197 1.75837991 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 135 9.15e-36   NR MBI4658204.1 2026799 g36426 i0 89.6 0.990147783251232 67 7 99 0 203 3 112 178 MBI4658204.1 right-handed parallel beta-helix repeat-containing protein [Verrucomicrobiota bacterium] diamond 201 135 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30486225 30486225 PRJNA404067_P_NODE_28693_length_214_cov_1.300654_g28306_i0 PRJNA404067 28693 214 1.300654 2.78339956 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 65.1 2.47e-10   NR MEI6337628.1 2026799 g28306 i0 78.9 1.09345794392523 38 8 53.3 0 100 213 1 38 MEI6337628.1 TIM barrel protein [Verrucomicrobiota bacterium] diamond 234 65.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30565733 30565733 PRJNA404067_P_NODE_18553_length_242_cov_1.502762_g18166_i0 PRJNA404067 18553 242 1.502762 3.63668404 Chthoniobacter 295577 Bacteria Bacteria 129 3.5099999999999997e-35   NR WP_006982338.1 191863 g18166 i0 80.5 11.4545454545455 77 15 95.5 0 233 3 1 77 WP_006982338.1 segregation and condensation protein A [Chthoniobacter flavus] diamond 2772 130 0.992307692307692 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
30643985 30643985 PRJNA404067_P_NODE_21493_length_232_cov_1.567251_g21106_i0 PRJNA404067 21493 232 1.567251 3.63602232 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 43.5 0.0172   NR MDB6059320.1 2026801 g21106 i0 65.6 0.413793103448276 32 11 41.4 0 230 135 1144 1175 MDB6059320.1 autotransporter-associated beta strand repeat protein [Verrucomicrobiales bacterium] diamond 96 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
30707266 30707266 PRJNA404067_P_NODE_18214_length_244_cov_1.475410_g17827_i0 PRJNA404067 18214 244 1.47541 3.6000004 Luteolibacter sp. 1962973 Bacteria Bacteria 87.4 6.95e-18   NR MEO5713373.1 1962973 g17827 i0 65.3 2.70491803278689 72 25 88.5 0 27 242 629 700 MEO5713373.1 M6 family metalloprotease domain-containing protein [Luteolibacter sp.] diamond 660 87.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
30770690 30770690 PRJNA404067_P_NODE_32674_length_207_cov_1.410959_g32287_i0 PRJNA404067 32674 207 1.410959 2.92068513 Actomonas aquatica 2866162 Bacteria Bacteria 121 4.04e-30   NR WP_221028971.1 2866162 g32287 i0 85.5 2 69 10 100 0 1 207 404 472 WP_221028971.1 glutamine amidotransferase [Actomonas aquatica] diamond 414 121 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Actomonas Actomonas aquatica
31086506 31086506 PRJNA404067_P_NODE_33115_length_207_cov_0.876712_g32728_i0 PRJNA404067 33115 207 0.876712 1.81479384 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 127 1.6199999999999996e-34   NR HET9523859.1 2832348 g32728 i0 88.2 0.985507246376812 68 8 98.6 0 205 2 128 195 HET9523859.1 exosortase-associated EpsI family protein [Terrimicrobiaceae bacterium] diamond 204 127 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
31212444 31212444 PRJNA404067_P_NODE_36255_length_203_cov_1.450704_g35868_i0 PRJNA404067 36255 203 1.450704 2.94492912 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 80.5 8.71e-16   NR HEY5744049.1 2832348 g35868 i0 52.3 0.960591133004926 65 31 96.1 0 202 8 309 373 HEY5744049.1 hypothetical protein [Terrimicrobiaceae bacterium] diamond 195 80.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
31276059 31276059 PRJNA404067_P_NODE_41135_length_192_cov_2.229008_g40748_i0 PRJNA404067 41135 192 2.229008 4.27969536 Luteolibacter arcticus 1581411 Bacteria Bacteria 87.4 3.38e-18   NR WP_264486737.1 1581411 g40748 i0 59 0.953125 61 25 95.3 0 191 9 642 702 WP_264486737.1 uracil-DNA glycosylase family protein [Luteolibacter arcticus] diamond 183 87.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter arcticus
31419314 31419314 PRJNA404067_P_NODE_17876_length_246_cov_1.702703_g17489_i0 PRJNA404067 17876 246 1.702703 4.18864938 Verrucomicrobiota 74201 Bacteria Bacteria 67.4 7.61e-11   NR WP_265595607.1 1403819 g17489 i0 66.7 1.02439024390244 42 14 51.2 0 127 2 9 50 WP_265595607.1 SNF2-related protein [Verrucomicrobium sp. BvORR106] diamond 252 67.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. BvORR106
32130416 32130416 PRJNA404067_P_NODE_23698_length_226_cov_1.721212_g23311_i0 PRJNA404067 23698 226 1.721212 3.88993912 Luteolibacter sp. LG18 2819286 Bacteria Bacteria 55.1 1.33e-6   NR WP_338290021.1 2819286 g23311 i0 44.4 0.955752212389381 72 40 95.6 0 218 3 1011 1082 WP_338290021.1 beta strand repeat-containing protein [Luteolibacter sp. LG18] diamond 216 55.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. LG18
32478500 32478500 PRJNA404067_P_NODE_17479_length_249_cov_1.122340_g17092_i0 PRJNA404067 17479 249 1.12234 2.7946266 Terrimicrobium sacchariphilum 690879 Bacteria Bacteria 92.8 9.92e-20   NR WP_075079047.1 690879 g17092 i0 60.8 1.78313253012048 74 29 89.2 0 25 246 672 745 WP_075079047.1 hypothetical protein [Terrimicrobium sacchariphilum] diamond 444 92.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium Terrimicrobium sacchariphilum
32825082 32825082 PRJNA404067_P_NODE_37680_length_202_cov_0.907801_g37293_i0 PRJNA404067 37680 202 0.907801 1.83375802 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 132 1.15e-35   NR HEX8280515.1 2201154 g37293 i0 92.5 2.98514851485149 67 5 99.5 0 2 202 220 286 HEX8280515.1 alanine--tRNA ligase-related protein [Chthoniobacterales bacterium] diamond 603 132 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
32856463 32856463 PRJNA404067_P_NODE_13640_length_282_cov_6.081448_g13253_i0 PRJNA404067 13640 282 6.081448 17.14968336 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 48.1 6.43e-4   NR MEI6077088.1 2026799 g13253 i0 39.4 0.75531914893617 71 40 73.4 2 253 47 145 214 MEI6077088.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 213 48.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;