RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA404067" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA404067 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26758808 26758808 PRJNA404067_P_NODE_43641_length_176_cov_3.295359_g43254_i0 PRJNA404067 43641 176 3.295359 5.79983184 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 110 1.51e-26   NR XP_024573346.1 4781 g43254 i0 91.2 4.85795454545455 57 5 97.2 0 173 3 352 408 XP_024573346.1 nadhubiquinone oxidoreductase [Plasmopara halstedii] diamond 855 110 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
27154945 27154945 PRJNA404067_P_NODE_31082_length_209_cov_1.391892_g30695_i0 PRJNA404067 31082 209 1.391892 2.90905428 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 79 4.2e-15   NR KAF1334479.1 82926 g30695 i0 89.7 23.511961722488 39 4 56 0 2 118 740 778 KAF1334479.1 Pol protein, partial [Globisporangium splendens] diamond 4914 79.3 0.996216897856242 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
31672330 31672330 PRJNA404067_P_NODE_20217_length_236_cov_1.611429_g19830_i0 PRJNA404067 20217 236 1.611429 3.80297244 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 112 5.95e-30   NR KAF0738771.1 100861 g19830 i0 71.2 10.2076271186441 73 21 92.8 0 10 228 36 108 KAF0738771.1 hypothetical protein Ae201684_005384 [Aphanomyces euteiches] diamond 2409 112 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;