RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA404067" and tax_phylum = "Candidatus Niyogiibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Niyogiibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA404067 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30580747 30580747 PRJNA404067_P_NODE_31653_length_208_cov_2.571429_g31266_i0 PRJNA404067 31653 208 2.571429 5.34857232 Candidatus Niyogibacteria bacterium RIFCSPLOWO2_12_FULL_41_13 1801726 Bacteria Bacteria 58.9 4.74e-8   NR OGZ31561.1 1801726 g31266 i0 45.3 0.923076923076923 64 32 92.3 1 207 16 1596 1656 OGZ31561.1 MAG: hypothetical protein A3H02_02535 [Candidatus Niyogibacteria bacterium RIFCSPLOWO2_12_FULL_41_13] diamond 192 58.9 1 Bacteria Bacteria candidate phyla   Candidatus Niyogiibacteriota         Candidatus Niyogibacteria bacterium RIFCSPLOWO2_12_FULL_41_13

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;