RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA404067" and tax_phylum = "Candidatus Giovannoniibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Giovannoniibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA404067 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31672331 31672331 PRJNA404067_P_NODE_33757_length_206_cov_0.882759_g33370_i0 PRJNA404067 33757 206 0.882759 1.81848354 Bacteria 2 Bacteria Bacteria 119 1.31e-29   NR KKT62459.1 1618648 g33370 i0 88.1 1.71844660194175 59 7 85.9 0 2 178 122 180 KKT62459.1 MAG: hypothetical protein UW55_C0012G0019 [Candidatus Giovannonibacteria bacterium GW2011_GWA2_44_26] diamond 354 119 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium GW2011_GWA2_44_26
32730680 32730680 PRJNA404067_P_NODE_36640_length_203_cov_0.901408_g36253_i0 PRJNA404067 36640 203 0.901408 1.82985824 Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_ 2053557 Bacteria Bacteria 55.1 9.8e-7   NR OGF77578.1 1798330 g36253 i0 89.7 0.428571428571429 29 3 42.9 0 161 75 224 252 OGF77578.1 MAG: hypothetical protein A2W54_02510 [Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_43_13] diamond 87 55.1 1 Bacteria Bacteria candidate phyla   Candidatus Giovannoniibacteriota         Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_43_13

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;