RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA404067" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA404067 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15717204 15717204 PRJNA404067_P_NODE_21593_length_232_cov_1.175439_g21206_i0 PRJNA404067 21593 232 1.175439 2.72701848 Thermus brevis 2862456 Bacteria Bacteria 139 1.2099999999999999e-40   NR WP_219759805.1 2862456 g21206 i0 84.4 0.995689655172414 77 12 99.6 0 1 231 18 94 WP_219759805.1 hypothetical protein, partial [Thermus brevis] diamond 231 139 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus brevis
28654501 28654501 PRJNA404067_P_NODE_32507_length_207_cov_2.164384_g32120_i0 PRJNA404067 32507 207 2.164384 4.48027488 Allomeiothermus silvanus 52022 Bacteria Bacteria 145 1.33e-40   NR MBI5812382.1 52022 g32120 i0 95.6 0.985507246376812 68 3 98.6 0 3 206 118 185 MBI5812382.1 transposase [Allomeiothermus silvanus] diamond 204 145 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Allomeiothermus Allomeiothermus silvanus
31212443 31212443 PRJNA404067_P_NODE_35035_length_204_cov_2.223776_g34648_i0 PRJNA404067 35035 204 2.223776 4.53650304 Thermus brockianus 56956 Bacteria Bacteria 67.8 2.43e-12   NR WP_244362263.1 56956 g34648 i0 52.9 2 68 31 98.5 1 2 202 8 75 WP_244362263.1 hypothetical protein [Thermus brockianus] diamond 408 67.8 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus brockianus
31371228 31371228 PRJNA404067_P_NODE_19576_length_238_cov_1.502825_g19189_i0 PRJNA404067 19576 238 1.502825 3.5767235 Synergistetes bacterium ADurb.BinA166 1852916 Bacteria Bacteria 58.9 6.11e-8   NR OPZ38862.1 1852916 g19189 i0 51.9 0.680672268907563 54 26 68.1 0 173 12 2 55 OPZ38862.1 MAG: hypothetical protein BWY99_01535 [Synergistetes bacterium ADurb.BinA166] diamond 162 58.9 1 Bacteria   Thermotogati Synergistota         Synergistetes bacterium ADurb.BinA166

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;