RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA404067" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA404067 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27092142 27092142 PRJNA404067_P_NODE_27522_length_217_cov_0.858974_g27135_i0 PRJNA404067 27522 217 0.858974 1.86397358 Bacteria 2 Bacteria Bacteria 99.8 2.34e-22   NR WP_022820352.1 854 g27135 i0 81 1.6036866359447 58 11 80.2 0 216 43 608 665 WP_022820352.1 type I restriction endonuclease subunit R [Fusobacterium russii] diamond 348 100 0.998 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium russii
27612664 27612664 PRJNA404067_P_NODE_25524_length_221_cov_6.406250_g25137_i0 PRJNA404067 25524 221 6.40625 14.1578125 Fusobacterium necrogenes 858 Bacteria Bacteria 96.7 2.9300000000000004e-21   NR WP_115268256.1 858 g25137 i0 83.1 0.800904977375566 59 10 80.1 0 184 8 186 244 WP_115268256.1 MobA/MobL family protein [Fusobacterium necrogenes] diamond 177 96.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrogenes
29002223 29002223 PRJNA404067_P_NODE_40328_length_195_cov_19.111940_g39941_i0 PRJNA404067 40328 195 19.11194 37.268283 uncultured Fusobacterium sp. 159267 Bacteria Bacteria 127 4.61e-34   NR WP_204711966.1 159267 g39941 i0 100 0.969230769230769 63 0 96.9 0 7 195 1 63 WP_204711966.1 L-lactate dehydrogenase [uncultured Fusobacterium sp.] diamond 189 127 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium uncultured Fusobacterium sp.
30612412 30612412 PRJNA404067_P_NODE_32233_length_208_cov_0.870748_g31846_i0 PRJNA404067 32233 208 0.870748 1.81115584 Fusobacterium animalis ATCC 51191 997347 Bacteria Bacteria 97.4 1.2e-23   NR EGQ72690.1 997347 g31846 i0 81.5 1.58653846153846 54 10 77.9 0 162 1 46 99 EGQ72690.1 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase, partial [Fusobacterium animalis ATCC 51191] diamond 330 97.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;