RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA404067" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA404067 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28166053 28166053 PRJNA404067_P_NODE_34785_length_205_cov_0.888889_g34398_i0 PRJNA404067 34785 205 0.888889 1.82222245 Phytomonas 5706 Euglenozoa other_Eukaryota 43.9 0.00857   NR CCW69476.1 223615 g34398 i0 34 2.59024390243902 53 34 77.6 1 203 45 51 102 CCW69476.1 unnamed protein product [Phytomonas sp. Hart1] diamond 531 43.9 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Phytomonas Phytomonas sp. Hart1
28938742 28938742 PRJNA404067_P_NODE_45568_length_164_cov_5.922330_g45181_i0 PRJNA404067 45568 164 5.92233 9.7126212 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 84.7 1.99e-17   NR XP_044548673.1 51637 g45181 i0 82 0.914634146341463 50 9 91.5 0 164 15 486 535 XP_044548673.1 uncharacterized protein C9374_004961 [Naegleria lovaniensis] diamond 150 84.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
30692372 30692372 PRJNA404067_P_NODE_11493_length_313_cov_3.503968_g11108_i0 PRJNA404067 11493 313 3.503968 10.96741984 Naegleria 5761 Heterolobosea other_Eukaryota 85.9 5.99e-17   NR XP_044569057.1 5763 g11108 i0 41.7 2.96166134185304 103 55 94.9 2 312 16 485 586 XP_044569057.1 uncharacterized protein FDP41_007521 [Naegleria fowleri] diamond 927 85.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;