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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA401346" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA401346 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2964902 2964902 PRJNA401346_P_NODE_183_length_1029_cov_1.977273_g173_i0 PRJNA401346 183 1029 1.977273 20.34613917 Romerolagus diazi 48089 Chordata Chordata 486 2.0099999999999998e-170   NR AIM44674.1 48089 g173 i0 76.4 6.40816326530612 314 66 91.5 2 14 955 17 322 AIM44674.1 immunoglobulin gamma heavy chain constant region, partial [Romerolagus diazi] diamond 6594 486 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Romerolagus Romerolagus diazi
15716968 15716968 PRJNA401346_P_NODE_513_length_642_cov_1.265060_g493_i0 PRJNA401346 513 642 1.26506 8.1216852 Metazoa 33208 Chordata Chordata 298 6.85e-98   NR XP_039263546.1 7725 g493 i0 66.5 2.87383177570093 209 68 96.7 1 629 9 130 338 XP_039263546.1 cathepsin B-like [Styela clava] diamond 1845 299 0.996655518394649 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
19540140 19540140 PRJNA401346_P_NODE_836_length_508_cov_1.505593_g815_i0 PRJNA401346 836 508 1.505593 7.64841244 Lepus europaeus 9983 Chordata Chordata 137 6.69e-34   NR XP_062067949.1 9983 g815 i0 55.1 1.03937007874016 176 69 99.8 3 507 1 1689 1861 XP_062067949.1 cardiomyopathy-associated protein 5 [Lepus europaeus] diamond 528 137 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Lepus Lepus europaeus
26726864 26726864 PRJNA401346_P_NODE_7781_length_204_cov_0.895105_g7760_i0 PRJNA401346 7781 204 0.895105 1.8260142 Oryctolagus cuniculus 9986 Chordata Chordata 42.4 0.0305   NR XP_069928339.1 9986 g7760 i0 76 0.367647058823529 25 6 36.8 0 202 128 645 669 XP_069928339.1 solute carrier family 12 member 8 isoform X2 [Oryctolagus cuniculus] diamond 75 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
27345207 27345207 PRJNA401346_P_NODE_8803_length_201_cov_0.914286_g8782_i0 PRJNA401346 8803 201 0.914286 1.83771486 Metazoa 33208 Chordata Chordata 100 3.36e-23   NR XP_045709291.1 9423 g8782 i0 67.2 103.537313432836 67 22 100 0 1 201 54 120 XP_045709291.1 calreticulin-3 [Phyllostomus hastatus] diamond 20811 100 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus hastatus
27534528 27534528 PRJNA401346_P_NODE_7143_length_206_cov_0.882759_g7122_i0 PRJNA401346 7143 206 0.882759 1.81848354 Chordata 7711 Chordata Chordata 54.7 1.4e-6   NR XP_044291388.1 61221 g7122 i0 44.1 10.4708737864078 68 38 99 0 205 2 675 742 XP_044291388.1 relA-associated inhibitor [Varanus komodoensis] diamond 2157 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
27565921 27565921 PRJNA401346_P_NODE_7424_length_205_cov_0.888889_g7403_i0 PRJNA401346 7424 205 0.888889 1.82222245 Mammalia 40674 Chordata Chordata 65.1 3.05e-10   NR XP_051683780.2 9986 g7403 i0 100 1.81463414634146 31 0 45.4 0 112 204 1 31 XP_051683780.2 rho-associated protein kinase 2 isoform X1 [Oryctolagus cuniculus] diamond 372 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
27660938 27660938 PRJNA401346_P_NODE_5084_length_236_cov_1.937143_g5063_i0 PRJNA401346 5084 236 1.937143 4.57165748 Opisthokonta 33154 Chordata Chordata 77.4 2.91e-15   NR CBY41553.1 34765 g5063 i0 67.9 2.02118644067797 53 17 67.4 0 235 77 163 215 CBY41553.1 unnamed protein product [Oikopleura dioica] diamond 477 77.4 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
28749183 28749183 PRJNA401346_P_NODE_7407_length_205_cov_1.298611_g7386_i0 PRJNA401346 7407 205 1.298611 2.66215255 Oryctolagus cuniculus 9986 Chordata Chordata 43.9 0.00892   NR XP_069914521.1 9986 g7386 i0 47.9 0.702439024390244 48 23 70.2 2 145 2 430 475 XP_069914521.1 cyclin-dependent kinase 14 isoform X3 [Oryctolagus cuniculus] diamond 144 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
28843719 28843719 PRJNA401346_P_NODE_8208_length_203_cov_0.901408_g8187_i0 PRJNA401346 8208 203 0.901408 1.82985824 Phyllostomus discolor 89673 Chordata Chordata 54.3 2.79e-7   NR KAF6120004.1 89673 g8187 i0 43.1 0.960591133004926 65 36 94.6 1 201 10 1 65 KAF6120004.1 hypothetical protein HJG60_010341 [Phyllostomus discolor] diamond 195 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor
29380649 29380649 PRJNA401346_P_NODE_3669_length_273_cov_1.509434_g3648_i0 PRJNA401346 3669 273 1.509434 4.12075482 Oikopleura dioica 34765 Chordata Chordata 97.4 1.5699999999999994e-23   NR CAG5105686.1 34765 g3648 i0 45 1.0989010989011 100 45 98.9 1 2 271 33 132 CAG5105686.1 Oidioi.mRNA.OKI2018_I69.chr1.g2360.t1.cds [Oikopleura dioica] diamond 300 97.4 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
29822478 29822478 PRJNA401346_P_NODE_6311_length_209_cov_0.864865_g6290_i0 PRJNA401346 6311 209 0.864865 1.80756785 Oryctolagus cuniculus 9986 Chordata Chordata 43.9 0.00823   NR XP_069908675.1 9986 g6290 i0 50 1.27751196172249 30 15 43.1 0 3 92 187 216 XP_069908675.1 ras association domain-containing protein 3 isoform X2 [Oryctolagus cuniculus] diamond 267 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
31592602 31592602 PRJNA401346_P_NODE_8576_length_202_cov_0.907801_g8555_i0 PRJNA401346 8576 202 0.907801 1.83375802 Bubalus bubalis 89462 Chordata Chordata 119 3.31e-29   NR XP_045021824.1 89462 g8555 i0 100 2.98514851485149 67 0 99.5 0 2 202 250 316 XP_045021824.1 ski oncogene [Bubalus bubalis] diamond 603 119 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bubalus Bubalus bubalis
32478495 32478495 PRJNA401346_P_NODE_7319_length_206_cov_0.882759_g7298_i0 PRJNA401346 7319 206 0.882759 1.81848354 Choloepus didactylus 27675 Chordata Chordata 57 2.17e-7   NR XP_037701581.1 27675 g7298 i0 65.2 4.00485436893204 46 16 67 0 143 6 534 579 XP_037701581.1 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like [Choloepus didactylus] diamond 825 57 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pilosa Megalonychidae Choloepus Choloepus didactylus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;