RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA400391" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA400391 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29759395 29759395 PRJNA400391_S_NODE_2811_length_239_cov_3.392157_g2750_i0 PRJNA400391 2811 239 3.392157 8.10725523 Perkinsela sp. CCAP 156 1935466 Euglenozoa other_Eukaryota 54.7 1.35e-7   NR KNH04483.1 1314962 g2750 i0 60 0.564853556485356 45 18 56.5 0 186 52 1 45 KNH04483.1 hypothetical protein XU18_4253 [Perkinsela sp. CCAP 1560/4] diamond 135 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea   Ichthyobodonidae Perkinsela Perkinsela sp. CCAP 1560/4
30423322 30423322 PRJNA400391_S_NODE_1813_length_291_cov_2.953125_g1752_i0 PRJNA400391 1813 291 2.953125 8.59359375 Perkinsela sp. CCAP 156 1935466 Euglenozoa other_Eukaryota 43.9 0.00713   NR KNH07262.1 1314962 g1752 i0 58.7 0.948453608247423 46 17 45.4 2 80 211 72 117 KNH07262.1 hypothetical protein XU18_1794 [Perkinsela sp. CCAP 1560/4] diamond 276 43.9 1 Eukaryota Discoba   Euglenozoa Kinetoplastea   Ichthyobodonidae Perkinsela Perkinsela sp. CCAP 1560/4
31244433 31244433 PRJNA400391_S_NODE_6015_length_160_cov_0.960000_g5954_i0 PRJNA400391 6015 160 0.96 1.536 Angomonas deanei 59799 Euglenozoa other_Eukaryota 74.7 6.84e-15   NR EPY32605.1 59799 g5954 i0 67.9 1.9875 53 15 99.4 1 159 1 123 173 EPY32605.1 large subunit ribosomal protein L31e [Angomonas deanei] diamond 318 74.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Angomonas Angomonas deanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;