RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA400391" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA400391 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26965531 26965531 PRJNA400391_S_NODE_3782_length_207_cov_2.075581_g3721_i0 PRJNA400391 3782 207 2.075581 4.29645267 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 6.8e-6   NR CDW75723.1 5949 g3721 i0 59.1 1.91304347826087 44 17 63.8 1 206 75 565 607 CDW75723.1 UNKNOWN [Stylonychia lemnae] diamond 396 52.8 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
29412137 29412137 PRJNA400391_S_NODE_3749_length_208_cov_1.566474_g3688_i0 PRJNA400391 3749 208 1.566474 3.25826592 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 66.6 9.93e-12   NR KRX01081.1 266149 g3688 i0 52.9 0.980769230769231 68 32 98.1 0 208 5 25 92 KRX01081.1 hypothetical protein PPERSA_02177 [Pseudocohnilembus persalinus] diamond 204 66.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;