RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA400391" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA400391 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29302637 29302637 PRJNA400391_S_NODE_5209_length_173_cov_3.297101_g5148_i0 PRJNA400391 5209 173 3.297101 5.70398473 Opisthokonta 33154 Chordata Chordata 58.5 1.51e-8   NR CAK8674078.1 159417 g5148 i0 55.1 4.2485549132948 49 22 85 0 3 149 145 193 CAK8674078.1 unnamed protein product [Clavelina lepadiformis] diamond 735 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
30707260 30707260 PRJNA400391_S_NODE_3274_length_222_cov_9.893048_g3213_i0 PRJNA400391 3274 222 9.893048 21.96256656 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 54.3 2.43e-6   NR CAI9150999.1 3082113 g3213 i0 96.6 0.391891891891892 29 1 39.2 0 222 136 501 529 CAI9150999.1 unnamed protein product, partial [Rangifer tarandus platyrhynchus] diamond 87 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
31655495 31655495 PRJNA400391_S_NODE_5477_length_169_cov_1.820896_g5416_i0 PRJNA400391 5477 169 1.820896 3.07731424 Clavelina lepadiformis 159417 Chordata Chordata 56.2 2.28e-7   NR CAK8676354.1 159417 g5416 i0 52.8 1.81065088757396 53 25 94.1 0 3 161 305 357 CAK8676354.1 unnamed protein product [Clavelina lepadiformis] diamond 306 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;