RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA400391" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA400391 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26885793 26885793 PRJNA400391_S_NODE_2341_length_261_cov_1.367257_g2280_i0 PRJNA400391 2341 261 1.367257 3.56854077 Botryobasidium botryosum FD-172 SS1 930990 Fungi Fungi 48.1 8.72e-5   NR KDQ05626.1 930990 g2280 i0 52.1 0.551724137931034 48 21 55.2 1 74 217 53 98 KDQ05626.1 hypothetical protein BOTBODRAFT_60891 [Botryobasidium botryosum FD-172 SS1] diamond 144 48.1 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Cantharellales Botryobasidiaceae Botryobasidium Botryobasidium botryosum
27896561 27896561 PRJNA400391_S_NODE_4125_length_198_cov_6.944785_g4064_i0 PRJNA400391 4125 198 6.944785 13.7506743 Dichomitus squalens LYAD-421 SS1 732165 Fungi Fungi 45.1 5.32e-4   NR EJF55551.1 732165 g4064 i0 74.3 1.21212121212121 35 9 53 0 105 1 46 80 EJF55551.1 hypothetical protein DICSQDRAFT_73520, partial [Dichomitus squalens LYAD-421 SS1] diamond 240 45.1 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Polyporaceae Dichomitus Dichomitus squalens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;