RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA400391" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA400391 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28591402 28591402 PRJNA400391_S_NODE_4247_length_195_cov_2.268750_g4186_i0 PRJNA400391 4247 195 2.26875 4.4240625 Flavobacterium sp. 239 Bacteria Bacteria 66.2 3.02e-11   NR WP_396190077.1 239 g4186 i0 52.4 0.969230769230769 63 29 96.9 1 191 3 133 194 WP_396190077.1 hypothetical protein [Flavobacterium sp.] diamond 189 66.2 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp.
29380648 29380648 PRJNA400391_S_NODE_3989_length_202_cov_1.395210_g3928_i0 PRJNA400391 3989 202 1.39521 2.8183242 Dysgonamonadaceae bacterium 2065189 Bacteria Bacteria 140 7.039999999999999e-37   NR PLB85210.1 2065189 g3928 i0 100 0.98019801980198 66 0 98 0 200 3 493 558 PLB85210.1 transposase [Dysgonamonadaceae bacterium] diamond 198 140 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae   Dysgonamonadaceae bacterium
30360253 30360253 PRJNA400391_S_NODE_4932_length_179_cov_1.770833_g4871_i0 PRJNA400391 4932 179 1.770833 3.16979107 Cloacibacterium caeni 2004710 Bacteria Bacteria 117 3.39e-30   NR MFN3271576.1 2004710 g4871 i0 98.3 0.988826815642458 59 1 98.9 0 179 3 108 166 MFN3271576.1 IS110 family transposase [Cloacibacterium caeni] diamond 177 117 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Cloacibacterium Cloacibacterium caeni
31655494 31655494 PRJNA400391_S_NODE_1717_length_297_cov_1.923664_g1656_i0 PRJNA400391 1717 297 1.923664 5.71328208 Bacteroides heparinolyticus 28113 Bacteria Bacteria 172 4.63e-51   NR WP_373728214.1 28113 g1656 i0 85.7 0.98989898989899 98 14 99 0 2 295 68 165 WP_373728214.1 IS1595 family transposase [Bacteroides heparinolyticus] diamond 294 172 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Prevotella heparinolytica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;