RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA400391" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA400391 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28275450 28275450 PRJNA400391_S_NODE_5746_length_164_cov_1.852713_g5685_i0 PRJNA400391 5746 164 1.852713 3.03844932 Dermacentor silvarum 543639 Arthropoda Arthropoda 48.5 5.24e-5   NR KAH7974023.1 543639 g5685 i0 51 0.932926829268293 51 25 93.3 0 164 12 85 135 KAH7974023.1 hypothetical protein HPB49_008418 [Dermacentor silvarum] diamond 153 48.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Ixodida Ixodidae Dermacentor Dermacentor silvarum
30170065 30170065 PRJNA400391_S_NODE_5872_length_162_cov_1.228346_g5811_i0 PRJNA400391 5872 162 1.228346 1.98992052 Idotea baltica 82763 Arthropoda Arthropoda 45.1 0.00139   NR MCL4113740.1 82763 g5811 i0 54.5 0.611111111111111 33 15 61.1 0 62 160 10 42 MCL4113740.1 hypothetical protein [Idotea baltica] diamond 99 45.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Isopoda Idoteidae Idotea Idotea baltica
31339300 31339300 PRJNA400391_S_NODE_3716_length_209_cov_1.385057_g3655_i0 PRJNA400391 3716 209 1.385057 2.89476913 Drosophila melanogaster 7227 Arthropoda Arthropoda 41.2 0.00791   NR AAT08475.1 7227 g3655 i0 57.9 0.545454545454545 38 16 54.5 0 128 15 9 46 AAT08475.1 LD48059p [Drosophila melanogaster] diamond 114 41.2 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila melanogaster
31624005 31624005 PRJNA400391_S_NODE_3676_length_210_cov_4.022857_g3615_i0 PRJNA400391 3676 210 4.022857 8.4479997 Stegodyphus mimosarum 407821 Arthropoda Arthropoda 48.1 1.59e-4   NR KFM60918.1 407821 g3615 i0 56.4 0.557142857142857 39 17 55.7 0 9 125 113 151 KFM60918.1 hypothetical protein X975_13633, partial [Stegodyphus mimosarum] diamond 117 48.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Araneae Eresidae Stegodyphus Stegodyphus mimosarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;