RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA400391" and tax_clade = "PVC group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA400391 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2964859 2964859 PRJNA400391_S_NODE_5843_length_162_cov_3.047244_g5782_i0 PRJNA400391 5843 162 3.047244 4.93653528 Planctomycetota bacterium 2026780 Bacteria Bacteria 108 1.21e-28   NR TXT34001.1 2026780 g5782 i0 96.2 0.981481481481482 53 2 98.1 0 161 3 29 81 TXT34001.1 MAG: hypothetical protein FD138_1752 [Planctomycetota bacterium] diamond 159 108 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
28117568 28117568 PRJNA400391_S_NODE_5405_length_170_cov_1.770370_g5344_i0 PRJNA400391 5405 170 1.77037 3.009629 Planctomycetia bacterium 2052181 Bacteria Bacteria 43.1 0.0103   NR MBL8793424.1 2052181 g5344 i0 51.2 0.723529411764706 41 20 72.4 0 29 151 553 593 MBL8793424.1 cation:proton antiporter [Planctomycetia bacterium] diamond 123 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia       Planctomycetia bacterium
31971956 31971956 PRJNA400391_S_NODE_6558_length_152_cov_1.051282_g6497_i0 PRJNA400391 6558 152 1.051282 1.59794864 Waddliaceae bacterium 2026802 Bacteria Bacteria 43.5 0.0053   NR HEY4831749.1 2026802 g6497 i0 42.9 0.690789473684211 35 20 69.1 0 4 108 146 180 HEY4831749.1 hypothetical protein [Waddliaceae bacterium] diamond 105 43.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;