RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA400391" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA400391 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23366103 23366103 PRJNA400391_S_NODE_1419_length_317_cov_4.641844_g1358_i0 PRJNA400391 1419 317 4.641844 14.71464548 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 96.7 1.9799999999999998e-23   NR HRN86953.1 2099670 g1358 i0 61.1 0.899053627760252 95 34 89.9 2 307 23 11 102 HRN86953.1 hypothetical protein [Candidatus Dojkabacteria bacterium] diamond 285 96.7 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium
27012098 27012098 PRJNA400391_S_NODE_4042_length_201_cov_1.596386_g3981_i0 PRJNA400391 4042 201 1.596386 3.20873586 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 52.8 4.66e-6   NR MEN9920673.1 2762014 g3981 i0 57.1 1.73134328358209 42 18 62.7 0 135 10 18 59 MEN9920673.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 348 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;