RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA400171" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA400171 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24640082 24640082 PRJNA400171_S_NODE_2940_length_237_cov_2.860577_g2850_i0 PRJNA400171 2940 237 2.860577 6.77956749 Bacteria 2 Bacteria Bacteria 122 2.2299999999999996e-31   NR MDX2168344.1 2026735 g2850 i0 76 25.1645569620253 75 18 94.9 0 235 11 247 321 MDX2168344.1 glutaminase A [Deltaproteobacteria bacterium] diamond 5964 122 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28370231 28370231 PRJNA400171_S_NODE_1266_length_313_cov_2.640845_g1176_i0 PRJNA400171 1266 313 2.640845 8.26584485 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.5 0.0441   NR MBI1944311.1 2026735 g1176 i0 37.5 0.766773162939297 80 44 70.9 1 20 241 24 103 MBI1944311.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 240 43.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30643979 30643979 PRJNA400171_S_NODE_753_length_374_cov_2.695652_g663_i0 PRJNA400171 753 374 2.695652 10.08173848 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.1 0.0199   NR MDP2342673.1 2026735 g663 i0 32.2 0.697860962566845 87 56 69.8 1 34 294 136 219 MDP2342673.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 261 45.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;